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Allow for fitting the susceptible population #408

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Tracked by #423
seabbs opened this issue Jun 14, 2023 · 4 comments · May be fixed by #904
Open
Tracked by #423

Allow for fitting the susceptible population #408

seabbs opened this issue Jun 14, 2023 · 4 comments · May be fixed by #904
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enhancement New feature or request

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@seabbs
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seabbs commented Jun 14, 2023

It would be useful to allow for fitting the susceptible population (currently passed as pop). This would require enabling a mode where the susceptibility correction was applied to observed data as well as just to beyond the forecast horizon.

@seabbs seabbs added the enhancement New feature or request label Jun 14, 2023
@sbfnk
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sbfnk commented Jun 14, 2023

enabling a mode where the susceptibility correction was applied to observed data as well as just to beyond the forecast horizon.

This, I think, would be a sensible change anyway.

@seabbs
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seabbs commented Jun 14, 2023

Yes agree. A complexity is returning the resulting Rt (as can currently only return one thing from a function) and if its worth communicating both adjusted and unadjusted Rt

@seabbs
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seabbs commented Jun 14, 2023

note you can already achieve this in practice if you moved the pop adjustment into the estimation window and used a ascertainment model but that isn't very clear and is a bit of a hack.

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seabbs commented Dec 19, 2024

With the new interface froom @sbfnk this would now be very easy to do

@seabbs seabbs self-assigned this Dec 19, 2024
@sbfnk sbfnk removed this from EpiNow2 v2.0.0 Dec 19, 2024
@sbfnk sbfnk added this to the CRAN v1.8 release milestone Dec 19, 2024
@seabbs seabbs linked a pull request Dec 19, 2024 that will close this issue
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