diff --git a/touchstone/script.R b/touchstone/script.R index b924f46f7..542f9ed24 100644 --- a/touchstone/script.R +++ b/touchstone/script.R @@ -57,6 +57,7 @@ touchstone::benchmark_run( stationary = { epinow( reported_cases = reported_cases, generation_time = generation_time, + delays = delay_opts(incubation_period, reporting_delay), rt = rt_opts(prior = list(mean = 2, sd = 0.2), gp_on = "R0"), stan = stan_opts( cores = 2, samples = 500, chains = 2, @@ -72,6 +73,7 @@ touchstone::benchmark_run( random_walk = { epinow( reported_cases = reported_cases, generation_time = generation_time, + delays = delay_opts(incubation_period, reporting_delay), rt = rt_opts(prior = list(mean = 2, sd = 0.2), rw = 7), gp = NULL, stan = stan_opts(