collect_metadata.yml

on:
  push:
    branches:
      - main
      - master
  pull_request:
    branches:
      - main
      - master

name: collect_metadata

jobs:
  collect:
    runs-on: ubuntu-latest

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      EMF_DATABASE_HOST: ${{ secrets.EMF_DATABASE_HOST }}
      EMF_DATABASE_USER: ${{ secrets.EMF_DATABASE_USER}}
      EMF_DATABASE_PASS: ${{ secrets.EMF_DATABASE_PASS}}
      EMF_DATABASE: ${{ secrets.EMF_DATABASE}}

    steps:
      - uses: actions/checkout@v3

      - uses: r-lib/actions/setup-r@v2

      - name: Install system dependencies
        run: |
          sudo apt-get install -y make libicu-dev pandoc libcurl4-openssl-dev libssl-dev git libgit2-dev libpq-dev libfontconfig1-dev libfreetype6-dev libfribidi-dev libharfbuzz-dev libjpeg-dev libpng-dev libtiff-dev libxml2-dev libssh-dev

      - name: Cache keys dependencies
        run: |
          install.packages('pkgdepends')
          saveRDS(pkgdepends::new_pkg_deps('https://github.com/emf-creaf/EMFtoolbox')$resolve()$get_resolution(), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Restore R package cache
        uses: actions/cache@v3
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install packages
        run: |
          R -e 'install.packages("remotes")'
          R -e 'remotes::install_github("emf-creaf/EMFtoolbox")'

      - name: Collect metadata and update db
        run: |
          R -e 'EMFtoolbox::collect_metadata(.dry = FALSE)'