adding regeneration to parse_forestable #21
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| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: collect_metadata | |
| jobs: | |
| collect: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| EMF_DATABASE_HOST: ${{ secrets.EMF_DATABASE_HOST }} | |
| EMF_DATABASE_USER: ${{ secrets.EMF_DATABASE_USER}} | |
| EMF_DATABASE_PASS: ${{ secrets.EMF_DATABASE_PASS}} | |
| EMF_DATABASE: ${{ secrets.EMF_DATABASE}} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get install -y make libicu-dev pandoc libcurl4-openssl-dev libssl-dev git libgit2-dev libpq-dev libfontconfig1-dev libfreetype6-dev libfribidi-dev libharfbuzz-dev libjpeg-dev libpng-dev libtiff-dev libxml2-dev libssh-dev | |
| - name: Cache keys dependencies | |
| run: | | |
| install.packages('pkgdepends') | |
| saveRDS(pkgdepends::new_pkg_deps('https://github.com/emf-creaf/EMFtoolbox')$resolve()$get_resolution(), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Restore R package cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install packages | |
| run: | | |
| R -e 'install.packages("remotes")' | |
| R -e 'remotes::install_github("emf-creaf/EMFtoolbox")' | |
| - name: Collect metadata and update db | |
| run: | | |
| R -e 'EMFtoolbox::collect_metadata(.dry = FALSE)' |