diff --git a/CHANGELOG.asciidoc b/CHANGELOG.asciidoc
index 791a258e98a..9f61392ab1f 100644
--- a/CHANGELOG.asciidoc
+++ b/CHANGELOG.asciidoc
@@ -67,7 +67,7 @@ https://github.com/elastic/beats/compare/v5.1.1...master[Check the HEAD diff]
 - Add labels to the Docker healthcheck metricset output. {pull}3707[3707]
 - Make system process metricset honor the cpu_ticks config option. {issue}3590[3590]
 - Support common.Time in mapstriface.toTime() {pull}3812[3812]
-
+- Fixing panic on prometheus collector when label has , {pull}3947[3947]
 *Packetbeat*
 
 *Winlogbeat*
diff --git a/metricbeat/module/prometheus/collector/collector_test.go b/metricbeat/module/prometheus/collector/collector_test.go
index c6a1954d220..2651efab7e3 100644
--- a/metricbeat/module/prometheus/collector/collector_test.go
+++ b/metricbeat/module/prometheus/collector/collector_test.go
@@ -51,6 +51,21 @@ func TestDecodeLine(t *testing.T) {
 				},
 			},
 		},
+		{
+			Line: `apiserver_request_count{client="Mozilla/5.0 (Macintosh; Intel Mac OS X 10_12_3) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Safari/537.36",code="200",contentType="",resource="elasticsearchclusters",verb="LIST"} 1`,
+			Event: PromEvent{
+				key:       "apiserver_request_count",
+				value:     int64(1),
+				labelHash: `client="Mozilla/5.0 (Macintosh; Intel Mac OS X 10_12_3) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Safari/537.36",code="200",contentType="",resource="elasticsearchclusters",verb="LIST"`,
+				labels: common.MapStr{
+					"client":      "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_12_3) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Safari/537.36",
+					"code":        int64(200),
+					"contentType": "",
+					"resource":    "elasticsearchclusters",
+					"verb":        "LIST",
+				},
+			},
+		},
 	}
 
 	for _, test := range tests {
diff --git a/metricbeat/module/prometheus/collector/data.go b/metricbeat/module/prometheus/collector/data.go
index 0f39e1d0fe3..ea659d6eebc 100644
--- a/metricbeat/module/prometheus/collector/data.go
+++ b/metricbeat/module/prometheus/collector/data.go
@@ -17,7 +17,8 @@ type PromEvent struct {
 // NewPromEvent creates a prometheus event based on the given string
 func NewPromEvent(line string) PromEvent {
 	// Separate key and value
-	split := strings.Split(line, " ")
+	splitPos := strings.LastIndex(line, " ")
+	split := []string{line[:splitPos], line[splitPos+1:]}
 
 	promEvent := PromEvent{
 		key:       split[0],
@@ -54,11 +55,11 @@ func extractLabels(labelsString string) common.MapStr {
 	keyValuePairs := common.MapStr{}
 
 	// Extract labels
-	labels := strings.Split(labelsString, ",")
+	labels := strings.Split(labelsString, "\",")
 	for _, label := range labels {
 		keyValue := strings.Split(label, "=")
 		// Remove " from value
-		keyValue[1] = keyValue[1][1 : len(keyValue[1])-1]
+		keyValue[1] = strings.Trim(keyValue[1], "\"")
 
 		// Converts value to int or float if needed
 		keyValuePairs[keyValue[0]] = convertValue(keyValue[1])
diff --git a/metricbeat/module/prometheus/stats/stats.go b/metricbeat/module/prometheus/stats/stats.go
index ad6b65dd953..7864aa0f74b 100644
--- a/metricbeat/module/prometheus/stats/stats.go
+++ b/metricbeat/module/prometheus/stats/stats.go
@@ -59,7 +59,10 @@ func (m *MetricSet) Fetch() (common.MapStr, error) {
 		if line[0] == '#' || strings.Contains(line, "quantile=") {
 			continue
 		}
-		split := strings.Split(line, " ")
+
+		splitPos := strings.LastIndex(line, " ")
+		split := []string{line[:splitPos], line[splitPos+1:]}
+
 		entries[split[0]] = split[1]
 	}