diff --git a/CRISPResso2/CRISPRessoCORE.py b/CRISPResso2/CRISPRessoCORE.py
index 10da6787..45ec50c1 100644
--- a/CRISPResso2/CRISPRessoCORE.py
+++ b/CRISPResso2/CRISPRessoCORE.py
@@ -3834,7 +3834,7 @@ def count_alternate_alleles(sub_base_vectors, ref_name, ref_sequence, ref_total_
                             'sgRNA_intervals': new_sgRNA_intervals,
                             'sgRNA_names': sgRNA_names,
                             'sgRNA_mismatches': sgRNA_mismatches,
-                            'sgRNA_sequences': [sgRNA],
+                            'sgRNA_sequences': sgRNA_sequences,
                             'quantification_window_idxs': new_include_idx,
                             'custom_colors': custom_config["colors"],
                         }
@@ -4867,7 +4867,7 @@ def get_scaffold_len(row, scaffold_start_loc, scaffold_seq):
                         'sgRNA_intervals': new_sgRNA_intervals,
                         'sgRNA_names': sgRNA_names,
                         'sgRNA_mismatches': sgRNA_mismatches,
-                        'sgRNA_sequences': [sgRNA],
+                        'sgRNA_sequences': sgRNA_sequences,
                         'quantification_window_idxs': new_include_idx,
                         'custom_colors': custom_config['colors']
                     }