From e0c67a9e6a2fabae394590f419ff173862a88af0 Mon Sep 17 00:00:00 2001 From: Samuel Nichols Date: Fri, 9 Sep 2022 10:34:52 -0600 Subject: [PATCH] Subtree working --- templates/CRISPResso_justcup.png | Bin 42782 -> 0 bytes templates/batchReport.html | 163 ----- templates/favicon.ico | Bin 1150 -> 0 bytes templates/layout.html | 236 ------- templates/multiReport.html | 265 ------- templates/pooledReport.html | 101 --- templates/report.html | 698 ------------------- templates/shared/partials/fig_reports.html | 31 - templates/shared/partials/fig_summaries.html | 11 - templates/shared/partials/log_params.html | 11 - templates/wgsReport.html | 99 --- 11 files changed, 1615 deletions(-) delete mode 100644 templates/CRISPResso_justcup.png delete mode 100644 templates/batchReport.html delete mode 100644 templates/favicon.ico delete mode 100644 templates/layout.html delete mode 100644 templates/multiReport.html delete mode 100644 templates/pooledReport.html delete mode 100644 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"CRISPRessoReports/templates/layout.html" %} -{% block head %} - - -{% endblock %} - -{% block content %} -
-
-
- -
-
- - {% if run_names|length > 0 %} -
-
-
{{report_name}}
-
-
-
- {% for run_name in run_names %} - {{run_name}} - {% endfor %} -
-
-
- {% endif %} - - {% if window_nuc_pct_quilts|length > 0 %} -
-
-
Nucleotide percentages around guides
-
-
- {% for plot_name in window_nuc_pct_quilts %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if nuc_pct_quilts|length > 0 %} -
-
-
Nucleotide percentages in the entire amplicon
-
-
- {% for plot_name in nuc_pct_quilts %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if window_nuc_conv_plots|length > 0 %} -
-
-
Conversion of target bases around guides
-
-
- {% for plot_name in window_nuc_conv_plots %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if nuc_conv_plots|length > 0 %} -
-
-
Conversion of target bases in the entire amplicon
-
-
- {% for plot_name in nuc_conv_plots %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if report_data['names']|length > 0 %} - {% for plot_name in report_data['names'] %} -
-
-
{{report_data['titles'][plot_name]}}
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} -
-
- {% endfor %} - {% endif %} - - -
- -
- -
- Download report - Link to report - -
- - {# data bit for web version: #} - {# -

Data: {{data_label}}

- #} -
{# jumbotron_content #} -
{# jumbrotron #} - - {# column #} - -
- -{% endblock %} - -{% block foot %} -{% endblock %} diff --git a/templates/favicon.ico b/templates/favicon.ico deleted file mode 100644 index 8aed2d0743b52f12c1f0f8b2b4c439ba77091af3..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 1150 zcmbVMTWeE65MIGIUy2Vt`{*xIQTtGpYE@zjwT6~P+tO3xNz+rB6BBFO#3;0l0Sg5a zZAl=|kQxgi_XiV_ko)E9&Xx@^1Pab!cV@nwZ)Rt5au~b9pOF#9_nYkQRmN^G#%}S& zA&y+&TrtMau3x)Y!si1jMS7+{#1gs$u8 zbUGr3j2X-&@p8G0S4Jb0RSQPWS&7j;UxRtyjV~aI9)ri>NaQ} z>~Oeuu(+b&=h3fA`*^3SaBOd3!|A}9U5943;giRWWz~!c!wYD(4dnBAQA^%g>LQ<) zs%h}-?+MOFw+owmecsy@dCWZbuGb5@(>av?=j;rMMTMfi$Kz)c7#knQqo+?`G?`%A zbYkx98F-lC8jXMI_VcApG3|C6>2zAuA-}}uB7YyLWxUk& zdL5Ze2Dw~LK*?khg+c+OoBUm*vs5Z2Y{?-l?@je8m5Ml`8pI$zXSiP&jEy - - - CRISPResso2 - - - - - - - - - - - - - - - - - - - - - - - {% if current_user is defined %} - - {% else %} - - {% endif %} - - - - - {% block head %}{% endblock %} - - - - - {% if current_user is defined %} -
- {{ self.help_block() }} -
- - {% with messages = get_flashed_messages(with_categories=true) %} - {% if messages %} - {% for category, message in messages %} - {% if category == "error" %} - - {% else %} - - {% endif %} - {% endfor %} - {% endif %} - {% endwith %} - {% endif %} - - {# if default user (normal crispresso mode) #} - {% if current_user == null or not current_user.is_anonymous and current_user.username == "DEFAULTUSER" %} - -
-
-
- {% if current_user is defined %} -
- {% else %} -
- {% endif %} -
-
-

CRISPResso2

-

Analysis of genome editing outcomes from deep sequencing data

-
-
-
-
- - - {% else %} - {# if doing user sessions #} - -
- {% endif %} - -
-
-
-
- {% block help_block %} {% endblock %} -
-
-
-
- - {% block content %}{% endblock %} - - {% if current_user is defined and (not current_user.is_anonymous and current_user.username == "DEFAULTUSER") %} -
-
- -
-
- {% else %} -
-
- -
-
- {% endif %} - - - - - - - {% block foot %}{% endblock %} - - - diff --git a/templates/multiReport.html b/templates/multiReport.html deleted file mode 100644 index b6784e4a..00000000 --- a/templates/multiReport.html +++ /dev/null @@ -1,265 +0,0 @@ -{% extends "layout.html" %} -{% block head %} - - -{% endblock %} - -{% block content %} -
-
- -
-
- - {% if run_names|length > 0 %} -
-
-
{{report_name}}
-
-
-
- {% for run_name in run_names %} - {{run_name}} - {% endfor %} -
-
-
- {% endif %} - - {% if window_nuc_pct_quilts|length > 0 %} -
-
-
Nucleotide percentages around guides
-
-
- {% for plot_name in window_nuc_pct_quilts %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if nuc_pct_quilts|length > 0 %} -
-
-
Nucleotide percentages in the entire amplicon
-
-
- {% for plot_name in nuc_pct_quilts %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if window_nuc_conv_plots|length > 0 %} -
-
-
Conversion of target bases around guides
-
-
- {% for plot_name in window_nuc_conv_plots %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if nuc_conv_plots|length > 0 %} -
-
-
Conversion of target bases in the entire amplicon
-
-
- {% for plot_name in nuc_conv_plots %} -
{{report_data['titles'][plot_name]}}
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} - {% endfor %} -
-
- {% endif %} - - {% if report_data['names']|length > 0 %} - {% for plot_name in report_data['names'] %} -
-
-
{{report_data['titles'][plot_name]}}
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} -
-
- {% endfor %} - {% endif %} - - {% if allele_modification_heatmap_plot_names|length > 0 %} - {% for heatmap_plot_name in allele_modification_heatmap_plot_names %} - {% set line_plot_name = allele_modification_line_plot_names[loop.index - 1] %} - {% set modification_type = heatmap_plot_name.split('_')[3] %} -
-
-
{{allele_modification_heatmap_plot_titles[heatmap_plot_name]}}
- -
-
-
-
- {{allele_modification_heatmap_plot_htmls[heatmap_plot_name]}} - - {% for (data_label, data_path) in allele_modification_heatmap_plot_datas[heatmap_plot_name] %} -

Data: {{data_label}}

- {% endfor %} -
-
- {{allele_modification_line_plot_htmls[line_plot_name]}} - - {% for (data_label, data_path) in allele_modification_line_plot_datas[line_plot_name] %} -

Data: {{data_label}}

- {% endfor %} -
-
-
-
- - {% endfor %} - - - - {% endif %} - - {% if compact_plots_to_show|length > 0 %} -
-
-
Summary Plots
-
-
-
- {% for compact_plot in compact_plots_to_show %} - - {% endfor %} -
-
-
- {% endif %} - - -
- -
- -
{# jumbotron_content #} -
{# jumbrotron #} - -
{# column #} - -
-{% endblock %} - -{% block foot %} -{% endblock %} diff --git a/templates/pooledReport.html b/templates/pooledReport.html deleted file mode 100644 index ceb40426..00000000 --- a/templates/pooledReport.html +++ /dev/null @@ -1,101 +0,0 @@ -{% extends "CRISPRessoReports/templates/layout.html" %} -{% block head %} - - -{% endblock %} - -{% block content %} -
-
-
- -
-
- - {% if run_names|length > 0 %} -
-
-
{{report_name}}
-
-
-
- {% for region_name in run_names %} - {{region_name}} - {% endfor %} -
-
-
- {% endif %} - - {% if report_data['names']|length > 0 %} - {% for plot_name in report_data['names'] %} -
-
-
{{report_data['titles'][plot_name]}}
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} -
-
- {% endfor %} - {% endif %} - -
- Download report - Link to report - -
- {# data bit for web version: #} - {# -

Data: {{data_label}}

- #} -
{# jumbotron_content #} -
{# jumbrotron #} - -
{# column #} - -
-
-{% endblock %} - -{% block foot %} -{% endblock %} diff --git a/templates/report.html b/templates/report.html deleted file mode 100644 index 882d6731..00000000 --- a/templates/report.html +++ /dev/null @@ -1,698 +0,0 @@ -{% extends "layout.html" %} -{% block head %} - - -{% endblock %} - -{% block content %} -
-
-
-
-
-
- {% if report_data['report_display_name'] != '' %} -
{{report_data['report_display_name']}}
- {% endif %} -
CRISPResso2 run information
-
    -
  • - -
    • -
  • - -
    • -
-
-
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1a')}} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/log_params.html', report_data=report_data) }} -
-
-
- -
-
-
Allele assignments
-
    -
  • - -
    • -
  • - -
    • - {% if report_data['figures']['locs']['plot_1d'] %} -
  • - -
    • - {% endif %} -
-
-
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1b')}} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1c')}} -
- {% if report_data['figures']['locs']['plot_1d'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1d')}} -
- {% endif %} -
-
-
{# end card #} - - {# start global coding sequence report #} - {% if report_data['figures']['locs']['plot_5a'] %} -
-
-
Global frameshift analysis
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_5a')}} -
-
- {% endif %} - - {% if report_data['figures']['locs']['plot_6a'] %} -
-
-
Global frameshift mutagenesis profiles
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_6a')}} -
-
- {% endif %} - - {% if report_data['figures']['locs']['plot_8a'] %} -
-
-
Global splicing analysis
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_8a')}} -
-
- {% endif %} - {# end of global coding sequence analysis #} - - {# start hdr summary #} - {% if report_data['figures']['locs'][report_data.amplicons[0]]['plot_4g'] %} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
HDR summary plot
- {% else %} -
HDR summary report (all reads aligned to {{report_data.amplicons[0]}})
- {% endif %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4g', amplicon_name=report_data.amplicons[0])}} -
-
- {% endif %} - {# end HDR summary #} - - {# start prime editing report #} - {% if report_data['figures']['locs'][report_data.amplicons[0]]['plot_11a'] %} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Prime editing report
- {% else %} -
Prime editing report (all reads aligned to {{report_data.amplicons[0]}})
- {% endif %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_11a', amplicon_name=report_data.amplicons[0])}} -
-
- {% endif %} - - {% if report_data['figures']['sgRNA_based_names'][report_data.amplicons[0]] and report_data['figures']['sgRNA_based_names'][report_data.amplicons[0]]['11b']%} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Prime editing summary plots at analysis positions
- {% else %} -
Prime editing summary plots at analysis positions (aligned to {{report_data.amplicons[0]}})
- {% endif %} -
-
- {% for fig_name in report_data['figures']['sgRNA_based_names'][report_data.amplicons[0]]['11b'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name=fig_name, amplicon_name=report_data.amplicons[0])}} -
- {% endfor %} -
-
- {% endif %} - {# end plot 11b for prime editing #} - - {% if report_data['figures']['locs']['plot_11c'] %} -
-
-
Scaffold insertions
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_11c')}} -
-
- {% endif %} - {# end prime editing section #} - - {% if report_data.amplicons|length == 1 %} -
{# if only one amplicon, just a normal div #} - {% else %} - {# If there is more than one amplicon, print a navigation to show each amplicon #} -

Reads are aligned to each amplicon sequence separately. Quantification and visualization of these reads are shown for each amplicon below:

-
-
-
Amplicons
- -
- {% endif %} {# end if report contains more than one amplicon #} - - - {% if report_data.amplicons|length == 1 %} {# if only one amplicon, just a normal div #} -
- {% else %} -
- {% endif %} - - {% for amplicon_name in report_data.amplicons %} - {% if report_data.amplicons|length == 1 %} {# if only one amplicon, just a normal div #} -
- {% elif loop.index0 == 0 %} {# if more than one amplicon, and the first, this is the active one #} -
-

Reads aligning to {{amplicon_name}}

{# this bit appears in print mode #} - {% else %} {# otherwise inactive tab #} -
-

Reads aligning to {{amplicon_name}}

{# this bit appears in print mode #} - {% endif %} - -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Nucleotide composition
- {% else %} -
Nucleotide composition for {{amplicon_name}}
- {% endif %} -
-
- {% if report_data['figures']['locs'][amplicon_name]['plot_2a'] %} -
-
-
- -
-
-
- -
- -
- - {% for (data_label,data_path) in report_data['figures']['datas'][amplicon_name]['plot_2a'] %} -

Data: {{data_label}}

- {% endfor %} -
-
- {% endif %} - - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['2b']%} -
- {% for fig_name in report_data['figures']['sgRNA_based_names'][amplicon_name]['2b'] %} - {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name=fig_name, amplicon_name=amplicon_name)}} - {% endfor %} -
- {% endif %} -
-
{# end card #} - -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Modification lengths
- {% else %} -
Modification lengths for {{amplicon_name}}
- {% endif %} -
    - {% if report_data['figures']['locs'][amplicon_name]['plot_3a'] %} -
  • - -
    • - {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_3b'] %} -
  • - -
    • - {% endif %} -
-
-
-
- {% if report_data['figures']['locs'][amplicon_name]['plot_3a'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_3a', amplicon_name=amplicon_name)}} -
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_3b'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_3b', amplicon_name=amplicon_name)}} -
- {% endif %} -
-
{# end card_body #} -
{# end card #} - -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Indel characterization
- {% else %} -
Indel characterization for {{amplicon_name}}
- {% endif %} -
    - {% if report_data['figures']['locs'][amplicon_name]['plot_4a'] %} -
  • - -
    • - {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_4b'] %} -
  • - -
    • - {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_4c'] %} -
  • - -
    • - {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_4d'] %} -
  • - -
    • - {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_4e'] %} -
  • - -
    • - {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_4f'] %} -
  • - -
    • - {% endif %} -
-
{# end card head #} -
-
- {% if report_data['figures']['locs'][amplicon_name]['plot_4a'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4a', amplicon_name=amplicon_name)}} -
- {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_4b'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4b', amplicon_name=amplicon_name)}} -
- {% endif %} - {% if report_data['figures']['locs'][amplicon_name]['plot_4c'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4c', amplicon_name=amplicon_name)}} -
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_4d'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4d', amplicon_name=amplicon_name)}} -
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_4e'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4e', amplicon_name=amplicon_name)}} -
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_4f'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4f', amplicon_name=amplicon_name)}} -
- {% endif %} -
-
{# end card body #} -
{# end card #} - - - {% if report_data['figures']['locs'][amplicon_name]['plot_5'] %} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Frameshift analysis
- {% else %} -
Frameshift analysis for {{amplicon_name}}
- {% endif %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_5', amplicon_name=amplicon_name)}} -
-
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_6'] %} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Frameshift mutagenesis profiles
- {% else %} -
Frameshift mutagenesis profiles for {{amplicon_name}}
- {% endif %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_6', amplicon_name=amplicon_name)}} -
-
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_7'] %} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Non-coding mutations
- {% else %} -
Coding mutations for {{amplicon_name}}
- {% endif %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_7', amplicon_name=amplicon_name)}} -
-
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_8'] %} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Splicing
- {% else %} -
Splicing for {{amplicon_name}}
- {% endif %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_8', amplicon_name=amplicon_name)}} -
-
- {% endif %} - - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['9']%} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Allele plots
- {% else %} -
Allele plots for {{amplicon_name}}
- {% endif %} -
-
- {% for fig_name in report_data['figures']['sgRNA_based_names'][amplicon_name]['9'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name=fig_name, amplicon_name=amplicon_name)}} -
- {% endfor %} -
-
- {% endif %} - - {% if report_data['figures']['locs'][amplicon_name]['plot_10a'] %} -
-
- {% if report_data.amplicons|length == 1 %} {# if only one amplicon #} -
Base editing
- {% else %} -
Base editing for {{amplicon_name}}
- {% endif %} -
    - {% if report_data['figures']['locs'][amplicon_name]['plot_10a'] %} -
  • - -
    • - {% endif %} - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['10d']%} -
  • - -
    • - {% endif %} - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['10e']%} -
  • - -
    • - {% endif %} - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['10f']%} -
  • - -
    • - {% endif %} -
-
-
-
- {% if report_data['figures']['locs'][amplicon_name]['plot_10c'] %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_10a', amplicon_name=amplicon_name)}} -
-
- - {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_10b', amplicon_name=amplicon_name)}} - {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_10c', amplicon_name=amplicon_name)}} -
-
- {% else %} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_10a', amplicon_name=amplicon_name)}} -
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_10b', amplicon_name=amplicon_name)}} -
-
- {% endif %} - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['10d']%} -
- {% for fig_name in report_data['figures']['sgRNA_based_names'][amplicon_name]['10d'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name=fig_name, amplicon_name=amplicon_name)}} -
- {% endfor %} -
- {% endif %} - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['10e']%} -
- {% for fig_name in report_data['figures']['sgRNA_based_names'][amplicon_name]['10e'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name=fig_name, amplicon_name=amplicon_name)}} -
- {% endfor %} -
- {% endif %} - {% if report_data['figures']['sgRNA_based_names'][amplicon_name] and report_data['figures']['sgRNA_based_names'][amplicon_name]['10f']%} -
- {% for fig_name in report_data['figures']['sgRNA_based_names'][amplicon_name]['10f'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_10f', amplicon_name=amplicon_name)}} -
- {% endfor %} - {% for fig_name in report_data['figures']['sgRNA_based_names'][amplicon_name]['10g'] %} -
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_10g', amplicon_name=amplicon_name)}} -
- {% endfor %} -
-
- {% endif %} -
-
{# end card #} - {% endif %} {# end base editing card #} -
{# end this amplicon tab #} - - {% endfor %} -
{# tab content #} -
-
{# jumbotron_content #} -
{# jumbrotron #} -
{# column #} -
- -
-{% endblock %} - -{% block foot %} - -{% endblock %} diff --git a/templates/shared/partials/fig_reports.html b/templates/shared/partials/fig_reports.html deleted file mode 100644 index 6f7e448e..00000000 --- a/templates/shared/partials/fig_reports.html +++ /dev/null @@ -1,31 +0,0 @@ -
- {% if amplicon_name is defined %} - {% if 'htmls' in report_data['figures'] and fig_name in report_data['figures']['htmls'][amplicon_name] %} - {{report_data['figures']['htmls'][amplicon_name][fig_name]|safe}} - {% else %} - {% if fig_name in ['plot_1a', 'plot_1b', 'plot_1c', 'plot_3a', 'plot_4a', 'plot_4b', 'plot_4c'] %} - - {% else %} - - {% endif %} - {% endif %} - - {% for (data_label,data_path) in report_data['figures']['datas'][amplicon_name][fig_name] %} -

Data: {{data_label}}

- {% endfor %} - {% else %} - {% if 'htmls' in report_data['figures'] and fig_name in report_data['figures']['htmls'] %} - {{report_data['figures']['htmls'][fig_name]|safe}} - {% else %} - {% if fig_name in ['plot_1a', 'plot_1b', 'plot_1c', 'plot_3a', 'plot_4a', 'plot_4b', 'plot_4c'] %} - - {% else %} - - {% endif %} - {% endif %} - - {% for (data_label,data_path) in report_data['figures']['datas'][fig_name] %} -

Data: {{data_label}}

- {% endfor %} - {% endif %} -
\ No newline at end of file diff --git a/templates/shared/partials/fig_summaries.html b/templates/shared/partials/fig_summaries.html deleted file mode 100644 index 384b7d8a..00000000 --- a/templates/shared/partials/fig_summaries.html +++ /dev/null @@ -1,11 +0,0 @@ -
- {% if report_data['htmls'][plot_name] %} - {{report_data['htmls'][plot_name]|safe}} - {% else %} - - {% endif %} - - {% for (data_label,data_path) in report_data['datas'][plot_name] %} -

Data: {{data_label}}

- {% endfor %} -
\ No newline at end of file diff --git a/templates/shared/partials/log_params.html b/templates/shared/partials/log_params.html deleted file mode 100644 index ad035ae3..00000000 --- a/templates/shared/partials/log_params.html +++ /dev/null @@ -1,11 +0,0 @@ -
-

CRISPResso version: {{report_data['run_data']['running_info']['version']}}

-

Run completed: {{report_data['run_data']['running_info']['end_time_string']}}

-

Amplicon sequence: 

{{report_data['run_data']['running_info']['args']['amplicon_seq']}}

- {% if report_data['run_data']['running_info']['args']['guide_seq'] != '' %} -

Guide sequence: 

{{report_data['run_data']['running_info']['args']['guide_seq']}}

- {% endif %} -

Command used: 

{{report_data['run_data']['running_info']['command_used']}}

-

Parameters: 

{{report_data['run_data']['running_info']['args_string']}}

-

Running log

-
diff --git a/templates/wgsReport.html b/templates/wgsReport.html deleted file mode 100644 index aba5afc6..00000000 --- a/templates/wgsReport.html +++ /dev/null @@ -1,99 +0,0 @@ -{% extends "CRISPRessoReports/templates/layout.html" %} -{% block head %} - - -{% endblock %} - -{% block content %} -
-
-
- -
-
- -
-
-
{{report_name}}
-
-
-
- {% for region_name in run_names %} - {{region_name}} - {% endfor %} -
-
-
- - {% if report_data['names']|length > 0 %} - {% for plot_name in report_data['names'] %} -
-
-
{{report_data['titles'][plot_name]}}
-
-
- {{ render_partial('CRISPRessoReports/templates/shared/partials/fig_summaries.html', report_data=report_data, plot_name=plot_name) }} -
-
- {% endfor %} - {% endif %} - -
- Download report - Link to report - -
- {# data bit for web version: #} - {# -

Data: {{data_label}}

- #} -
{# jumbotron_content #} -
{# jumbrotron #} - -
{# column #} - -
-
-{% endblock %} - -{% block foot %} -{% endblock %}