From 9f029b02c499edbba3c8a16ee8f929cf47ec4e25 Mon Sep 17 00:00:00 2001 From: Cole Lyman Date: Fri, 26 Apr 2024 16:26:27 -0600 Subject: [PATCH] Bump version to 2.3.1 and change default CRISPRessoPooled behavior to change in 2.3.2 (#428) --- CRISPResso2/CRISPRessoShared.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CRISPResso2/CRISPRessoShared.py b/CRISPResso2/CRISPRessoShared.py index 6f9ccbfc..4efb51ff 100644 --- a/CRISPResso2/CRISPRessoShared.py +++ b/CRISPResso2/CRISPRessoShared.py @@ -28,7 +28,7 @@ from CRISPResso2 import CRISPResso2Align from CRISPResso2 import CRISPRessoCOREResources -__version__ = "2.3.0" +__version__ = "2.3.1" ###EXCEPTIONS############################ @@ -1741,7 +1741,7 @@ def get_crispresso_header(description, header_str): term_width) + "\n" + output_line output_line += '\n' + ('[CRISPResso version ' + __version__ + ']').center(term_width) + '\n' + ( - '[Note that as of version 2.3.0 FLASh and Trimmomatic have been replaced by fastp for read merging and trimming. Accordingly, the --flash_command and --trimmomatic_command parameters have been replaced with --fastp_command. Also, --trimmomatic_options_string has been replaced with --fastp_options_string.\n\nAlso in version 2.3.1, when running CRISPRessoPooled in mixed-mode (amplicon file and genome are provided) the default behavior will be as if the --demultiplex_only_at_amplicons parameter is provided. This change means that reads and amplicons do not need to align to the exact locations.]').center( + '[Note that as of version 2.3.0 FLASh and Trimmomatic have been replaced by fastp for read merging and trimming. Accordingly, the --flash_command and --trimmomatic_command parameters have been replaced with --fastp_command. Also, --trimmomatic_options_string has been replaced with --fastp_options_string.\n\nAlso in version 2.3.2, when running CRISPRessoPooled in mixed-mode (amplicon file and genome are provided) the default behavior will be as if the --demultiplex_only_at_amplicons parameter is provided. This change means that reads and amplicons do not need to align to the exact locations.]').center( term_width) + "\n" + ('[For support contact k.clement@utah.edu or support@edilytics.com]').center(term_width) + "\n" description_str = ""