From 7a0f89ab590ee7700f5b88cf4e2b58508f237467 Mon Sep 17 00:00:00 2001 From: Samuel Nichols Date: Wed, 21 Feb 2024 08:37:19 -0700 Subject: [PATCH] Install dependencies --- .github/workflows/pytest.yml | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index e5f31de6..4c9b4b2b 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -19,14 +19,12 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Install CRISPResso - run: | - pip install . - - name: Install dependencies run: | python -m pip install --upgrade pip + pip install trimmomatic flash numpy cython jinja2 tbb=2020.2 pyparsing=2.3.1 scipy matplotlib plotly pandas pip install pytest pytest-cov + pip install . - name: Run Pytest run: |