You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Historically, this package queried the ArrayExpress API and more recently the ArrayExpress collection in BioStudies in search for Atlas experiments (gxa=true gives 3998 hits in BioStudies as of today).
It is worth noting that searching in ArrayExpress doesn't search/return the entirety of Expression Atlas experiments. With the "unglue" project, the assumption that all Atlas experiments are in ArrayExpress is not true any more. For example all new GEO experiments since 2017 are not in AE/BioStudies.
It would preferable to query the Atlas REST endpoint directly, and remove the dependance on BioStudies API queries.
The text was updated successfully, but these errors were encountered:
Historically, this package queried the ArrayExpress API and more recently the ArrayExpress collection in BioStudies in search for Atlas experiments (
gxa=true
gives 3998 hits in BioStudies as of today).It is worth noting that searching in ArrayExpress doesn't search/return the entirety of Expression Atlas experiments. With the "unglue" project, the assumption that all Atlas experiments are in ArrayExpress is not true any more. For example all new GEO experiments since 2017 are not in AE/BioStudies.
It would preferable to query the Atlas REST endpoint directly, and remove the dependance on BioStudies API queries.
The text was updated successfully, but these errors were encountered: