diff --git a/recipes/pgcgap/meta.yaml b/recipes/pgcgap/meta.yaml index b4c720615b3c9..3a5167f631a56 100644 --- a/recipes/pgcgap/meta.yaml +++ b/recipes/pgcgap/meta.yaml @@ -1,5 +1,5 @@ {% set name = "pgcgap" %} -{% set version = "1.0.30" %} +{% set version = "1.0.31" %} package: name: '{{ name }}' @@ -7,7 +7,7 @@ package: source: url: https://github.com/liaochenlanruo/pgcgap/archive/v{{ version }}.tar.gz - sha256: bd3aaa13635cf5621f784a4fb517da677f0326e45a2256f53e8b7304cefce9f2 + sha256: 69cd804ce28c886a990f1db466145c8664b6cc74c9f2b9803a2c73f1e9508c30 build: @@ -16,58 +16,56 @@ build: requirements: host: - - perl - - perl-bioperl >=1.7.2 - - perl-file-tee - - perl-sys-info - - perl-file-copy-recursive + - perl =5.26.2 + - perl-bioperl =1.7.2 + - perl-file-tee =0.07 +# - perl-sys-info + - perl-file-copy-recursive =0.45 run: - - abricate - - canu >=1.8 + - abricate =1.0.1 + - canu =2.0 - openjdk =8.0.152 - - abyss - - prokka - - mash - - modeltest-ng - - raxml-ng - - roary >=3.12.0 - - orthofinder >=2.3.8 - - gblocks - - gubbins - - iqtree - - minced - - fastme >=2.1.5 - - fastani >=1.1 - - fastp - - pal2nal - - perl - - perl-file-tee - - perl-data-dumper >=2.173 - - perl-pod-usage >=1.69 - - perl-getopt-long >=2.50 - - perl-parallel-forkmanager - - perl-file-copy-recursive - - perl-posix - - perl-sys-info - - htslib >=1.9 - - snippy >=4.3.6 + - abyss =2.2.5 + - prokka =1.14.6 + - mash =2.2.2 + - roary =3.13.0 + - orthofinder =2.3.8 + - gubbins =2.4.1 +# - iqtree +# - minced +# - fastme >=2.1.5 + - fastani =1.32 + - fastp =0.20.1 +# - fasttree + - pal2nal =14.1 + - perl =5.26.2 + - perl-file-tee =0.07 + - perl-data-dumper =2.173 + - perl-pod-usage =1.69 +# - perl-getopt-long >=2.50 + - perl-parallel-forkmanager =2.02 + - perl-file-copy-recursive =0.45 + - perl-posix =1.38 +# - perl-sys-info + - htslib =1.10.2 + - snippy =4.6.0 - sickle-trim >=1.33 - - r-base - - r-ggplot2 >=3.1.1 - - r-gplots - - r-corrplot - - trimal - - python - - matplotlib-base - - seaborn - - numpy - - pandas - - biopython - - r-pheatmap - - r-plotrix - - unicycler 0.4.7 - - wget - - coreutils + - r-base =3.6.3 + - r-ggplot2 =3.3.3 + - r-gplots =3.1.1 + - r-corrplot =0.88 + - trimal =1.4.1 + - python =3.7.8 + - matplotlib-base =3.4.1 + - seaborn =0.11.1 + - numpy =1.20.2 + - pandas =1.2.3 + - biopython =1.78 + - r-pheatmap =1.0.12 + - r-plotrix =3.8_1 + - unicycler =0.4.7 + - wget =1.20.1 + - coreutils =8.31 test: commands: