From 335775f960575d20207998c94b8b8b01ee701d17 Mon Sep 17 00:00:00 2001
From: Hualin Liu <liaochenlanruo@webmail.hzau.edu.cn>
Date: Tue, 24 Mar 2020 20:52:40 +0800
Subject: [PATCH] [ci skip] Merge PR 21057

Merge PR #21057, commits were:
 * A new recipe for BtToxin_scanner
 * Merge pull request #9 from bioconda/master

update local
 * Merge pull request #7 from bioconda/master

update local master
 * Merge pull request #5 from bioconda/master

update local files
 * Merge pull request #3 from bioconda/master

update local fork
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

update local recipes
---
 recipes/bttoxin_scanner/build.sh  | 21 ++++++++++++++
 recipes/bttoxin_scanner/meta.yaml | 47 +++++++++++++++++++++++++++++++
 2 files changed, 68 insertions(+)
 create mode 100644 recipes/bttoxin_scanner/build.sh
 create mode 100644 recipes/bttoxin_scanner/meta.yaml

diff --git a/recipes/bttoxin_scanner/build.sh b/recipes/bttoxin_scanner/build.sh
new file mode 100644
index 0000000000000..bd41bf6c2f826
--- /dev/null
+++ b/recipes/bttoxin_scanner/build.sh
@@ -0,0 +1,21 @@
+#!/bin/sh
+mkdir -p $PREFIX/bin
+mkdir -p $PREFIX/bin/lib
+
+cp BtToxin_scanner.pl $PREFIX/bin/BtToxin_scanner
+cp Scripts/*.pl $PREFIX/bin/
+cp lib/own.pm $PREFIX/bin/lib/
+cp -r BtToxinScanner_db $PREFIX/bin/BtToxinScanner_db
+cp -r BtToxinScanner_models $PREFIX/bin/BtToxinScanner_models
+
+
+chmod a+x $PREFIX/bin/BtToxin_scanner
+chmod a+x $PREFIX/bin/coreprocess.pl
+chmod a+x $PREFIX/bin/get_genes_table.pl
+chmod a+x $PREFIX/bin/get_all_info_nucl.pl
+chmod a+x $PREFIX/bin/get_all_info_orfs.pl
+chmod a+x $PREFIX/bin/get_all_info_prot.pl
+chmod a+x $PREFIX/bin/lib/own.pm
+
+
+BtToxin_scanner --version
diff --git a/recipes/bttoxin_scanner/meta.yaml b/recipes/bttoxin_scanner/meta.yaml
new file mode 100644
index 0000000000000..1a70763f24fee
--- /dev/null
+++ b/recipes/bttoxin_scanner/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "bttoxin_scanner" %}
+{% set version = "2.0.1" %}
+
+package:
+  name: '{{ name }}'
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/liaochenlanruo/BtToxin_scanner/archive/v{{ version }}.tar.gz
+  sha256: 5c7f5c22b9cb44114e5b9afcabc717a37840a36861a7926e3579cdb42fdb3eea
+
+build:
+  number: 0
+  noarch: generic
+
+requirements:
+  host:
+    - perl
+    - perl-bioperl >=1.7.2
+    - perl-file-tee
+
+  run:
+    - blast
+    - hmmer
+    - libsvm
+    - perl-pod-usage
+    - perl-getopt-long
+    - perl-file-tee
+    - pgcgap >=1.0.13
+
+test:
+  commands:
+    - BtToxin_scanner --version
+
+about:
+  home: https://github.com/liaochenlanruo/BtToxin_scanner/blob/master/README.md
+  license: GPLv3
+  license_family: GPL
+  license_file: LICENSE
+  summary: A toxin exploration tool for Bacillus thuringiensis
+  dev_url: https://github.com/liaochenlanruo/BtToxin_scanner/tree/master
+
+extra:
+  identifiers:
+    - biotools:BtToxin_scanner
+  recipe-maintainers:
+    - liaochenlanruo