From 29133cb2f8cee4aa86ae31035852a0926b72a857 Mon Sep 17 00:00:00 2001
From: Adrian Zimmer <z.adrian1995@gmail.com>
Date: Thu, 28 Apr 2022 11:27:56 +0200
Subject: [PATCH] [ci skip] Merge PR 34559

Merge PR #34559, commits were:
 * Update meta.yaml
 * Update version to 0.0.8, fix build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
---
 recipes/proteomiqon-psmbasedquantification/build.sh | 10 ++++++++++
 .../proteomiqon-psmbasedquantification/meta.yaml    | 13 ++++++-------
 .../proteomiqon-psmbasedquantification.sh           |  2 ++
 3 files changed, 18 insertions(+), 7 deletions(-)
 create mode 100644 recipes/proteomiqon-psmbasedquantification/build.sh
 create mode 100644 recipes/proteomiqon-psmbasedquantification/proteomiqon-psmbasedquantification.sh

diff --git a/recipes/proteomiqon-psmbasedquantification/build.sh b/recipes/proteomiqon-psmbasedquantification/build.sh
new file mode 100644
index 0000000000000..c9cd210e60002
--- /dev/null
+++ b/recipes/proteomiqon-psmbasedquantification/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+unzip $SRC_DIR/$PKG_VERSION
+PREFIX=$(echo "${PREFIX}" | tr '\\' '/')
+DOTNET_ROOT="${PREFIX}/lib/dotnet"
+TOOL_ROOT=$DOTNET_ROOT/tools/PSMBasedQuantification
+
+mkdir -p $PREFIX/bin $TOOL_ROOT
+cp -r $SRC_DIR/tools/net5.0/any/* $TOOL_ROOT
+cp "$RECIPE_DIR/proteomiqon-psmbasedquantification.sh" "$PREFIX/bin/proteomiqon-psmbasedquantification"
+chmod +x "$PREFIX/bin/proteomiqon-psmbasedquantification"
diff --git a/recipes/proteomiqon-psmbasedquantification/meta.yaml b/recipes/proteomiqon-psmbasedquantification/meta.yaml
index c0145e32314c1..70e0fb9b30d5f 100644
--- a/recipes/proteomiqon-psmbasedquantification/meta.yaml
+++ b/recipes/proteomiqon-psmbasedquantification/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.0.7" %}
-{% set sha256 = "106085931d058ca3b3fd4d7cb24915b22b002f31547944e36bdaa9c9617a20ca" %}
+{% set version = "0.0.8" %}
+{% set sha256 = "9b6990363bb382dcc63dd5d0b54751ce2bd72465a7394c6223fcbb51e7a3efdf" %}
 
 package:
   name: proteomiqon-psmbasedquantification
@@ -12,14 +12,13 @@ source:
 build:
   noarch: generic
   number: 0
-  script:
-    - dotnet tool install --add-source $SRC_DIR --tool-path $PREFIX/bin --version {{ version }} ProteomIQon.PSMBasedQuantification
 
 requirements:
   host:
-    - dotnet-sdk
+    - unzip
   run:
-    - dotnet-runtime
+    - dotnet-runtime =5.0
+    - openssl =1.1
 
 test:
   commands:
@@ -39,4 +38,4 @@ about:
     The quantification tool was designed to allow label-free quantification as well as quantification of full metabolic labeled samples. For this we use the known identity 
     of one of the the peptide ions and calculate the m/z of the unobserved differentially labeled counterpart to extract and quantify the corresponding XIC.
   dev_url: https://github.com/CSBiology/ProteomIQon
-  doc_url: https://csbiology.github.io/ProteomIQon/tools/PSMBasedQuantification.html
\ No newline at end of file
+  doc_url: https://csbiology.github.io/ProteomIQon/tools/PSMBasedQuantification.html
diff --git a/recipes/proteomiqon-psmbasedquantification/proteomiqon-psmbasedquantification.sh b/recipes/proteomiqon-psmbasedquantification/proteomiqon-psmbasedquantification.sh
new file mode 100644
index 0000000000000..1b83b617756eb
--- /dev/null
+++ b/recipes/proteomiqon-psmbasedquantification/proteomiqon-psmbasedquantification.sh
@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+dotnet $CONDA_PREFIX/lib/dotnet/tools/PSMBasedQuantification/ProteomIQon.PSMBasedQuantification.dll "$@"