use skani rather than FastANI as dependency for GTDB-Tk v2.4.0

[akesandgren]

(created using eb --new-pr)

As per the description of GTDB-Tk v2.4.0:

GTDB-Tk v2.4.0+ includes the following new features:

FastANI has been replaced by skani as the primary tool for computing Average Nucleotide Identity (ANI).Users may notice slight variations in the results compared to those obtained using FastANI.

[boegel]

@akesandgren Can you edit the PR description to motivate this change?

[akesandgren]

Description updated

[boegel]

@akesandgren So what happens if skani is not around, do users see failing runs?

[akesandgren]

It builds with FastANI but I didn't check if that version actually worked or not.

[boegel]

@boegelbot please test @ generoso

[boegelbot]

@boegel: Request for testing this PR well received on login1

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Submitted batch job 14625

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[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
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[boegel]

@boegelbot please test @ jsc-zen3

[boegelbot]

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21518 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21518 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

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Submitted batch job 5197

Test results coming soon (I hope)...

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[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
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[boegel]

lgtm

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3103.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/f0212581dd3326a2ca5694283746b8a7 for a full test report.

[boegel]

Going in, thanks @akesandgren!