R version 3.3.3 (2017-03-06) -- "Another Canoe"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin13.4.0 (64-bit)
R ist freie Software und kommt OHNE JEGLICHE GARANTIE.
Sie sind eingeladen, es unter bestimmten Bedingungen weiter zu verbreiten.
Tippen Sie 'license()' or 'licence()' für Details dazu.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Tippen Sie 'demo()' für einige Demos, 'help()' für on-line Hilfe, oder
'help.start()' für eine HTML Browserschnittstelle zur Hilfe.
Tippen Sie 'q()', um R zu verlassen.
[Vorher gesicherter Workspace wiederhergestellt]
> t1 <- read.csv("
1.csv readme.R tt_2_S.csv tt_4_TBaS.csv
2.csv tt_1_TB.csv tt_3_TBvS.csv
> t1 <- read.csv("tt_1_TB.csv")
> head(t1)
X Row Col Start
1 A_24_P66027 1 12 978
2 A_32_P77178 1 13 0
3 A_23_P212522 1 14 6520
4 A_24_P934473 1 15 1287
5 A_24_P9671 1 16 1051
6 A_32_P29551 1 17 0
Sequence ProbeUID
1 GCTGCCCGCATCTATGATTACGACCCCCTATATAAGGAGGCGCTGCAAATGCTGCGGGAT 3
2 GGTCAATTTTTGGTCAAAAGTACAGAGAGCATAGAATAAAAGCAAAGATGTGAATGTCTC 5
3 ATTTTCTAACTGTCCTCTTTCTTGGGTCTAAAGCTCATAATACACAAAGGCTTCCAGACC 7
4 AAGCCAAGTACTTTAGAGAAGAAAAACGGTCTCAGCTGAACCTGTAGTGAGAGCATGCAG 9
5 ATCCAGGTCAGATTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAA 11
6 CCTCTGTCTGGCTTTCTGGATCCTTAGATGAATTGCAGTTGGATTGGAATTTGGCACAAA 13
ControlType ProbeName GeneName SystematicName
1 0 A_24_P66027 APOBEC3B NM_004900
2 0 A_32_P77178 A_32_P77178 A_32_P77178
3 0 A_23_P212522 ATP11B NM_014616
4 0 A_24_P934473 LOC100132006 BX537921
5 0 A_24_P9671 DNAJA1 NM_001539
6 0 A_32_P29551 A_32_P29551 A_32_P29551
Description
1 ref|Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B (APOBEC3B), mRNA [NM_004900]
2 Unknown
3 ref|Homo sapiens ATPase, class VI, type 11B (ATP11B), mRNA [NM_014616]
4 gb|Homo sapiens mRNA; cDNA DKFZp686E20147 (from clone DKFZp686E20147) [BX537921]
5 ref|Homo sapiens DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1), mRNA [NM_001539]
6 Unknown
logFC t msd SE d ciL
1 -0.76959856 -3.8927979 0.37077998 0.19769805 -0.35806445 -1.1684171
2 0.04476325 0.2928927 -0.26354567 0.15283158 0.01610013 -0.2635457
3 1.06696108 6.1307780 0.71588118 0.17403355 0.43699467 0.7158812
4 -0.50767548 -8.8978381 0.39257565 0.05705605 -0.06816830 -0.6227753
5 1.46592639 9.7462445 1.16250385 0.15040936 0.51889752 1.1625038
6 -0.11563806 -1.4251830 -0.04804478 0.08113909 -0.02208134 -0.2793209
ciR qval
1 -0.37077998 1.030480e-03
2 0.35307217 8.392085e-01
3 1.41804099 1.390000e-06
4 -0.39257565 4.150000e-10
5 1.76934894 3.990000e-11
6 0.04804478 2.515534e-01
> t1 <- t1[, c("ProbeName", "GeneName", "logFC", "msd", "qval")]
> head(t1)
ProbeName GeneName logFC msd qval
1 A_24_P66027 APOBEC3B -0.76959856 0.37077998 1.030480e-03
2 A_32_P77178 A_32_P77178 0.04476325 -0.26354567 8.392085e-01
3 A_23_P212522 ATP11B 1.06696108 0.71588118 1.390000e-06
4 A_24_P934473 LOC100132006 -0.50767548 0.39257565 4.150000e-10
5 A_24_P9671 DNAJA1 1.46592639 1.16250385 3.990000e-11
6 A_32_P29551 A_32_P29551 -0.11563806 -0.04804478 2.515534e-01
> t1 <- t1[ t1$ProbeName != t1$GeneName, ]
Fehler in Ops.factor(t1$ProbeName, t1$GeneName) :
level sets of factors are different
> t1 <- read.csv("tt_1_TB.csv", stringsAsFactors=FALSE)
> t1 <- t1[, c("ProbeName", "GeneName", "logFC", "msd", "qval")]
> t1 <- t1[ t1$ProbeName != t1$GeneName, ]
> head(t1)
ProbeName GeneName logFC msd qval
1 A_24_P66027 APOBEC3B -0.7695986 0.3707800 1.03048e-03
3 A_23_P212522 ATP11B 1.0669611 0.7158812 1.39000e-06
4 A_24_P934473 LOC100132006 -0.5076755 0.3925757 4.15000e-10
5 A_24_P9671 DNAJA1 1.4659264 1.1625038 3.99000e-11
7 A_24_P801451 EHMT2 -0.5620778 0.4406253 1.23000e-10
8 A_32_P30710 RPL23 1.5344275 1.0618922 3.91000e-07
> dim(t1)
[1] 33280 5
> library(tmod)
> data(tmod)
> head(tmod$
tmod$GENES tmod$MODULES
tmod$GENES2MODULES tmod$MODULES2GENES
> head(tmod$GENES)
ID original.ID Description ENTREZ REFSEQ
CCL2 CCL2 CCL2 chemokine (C-C motif) ligand 2 6347 NM_002982
DCN DCN DCN decorin 1634 NM_001920
LIF LIF LIF leukemia inhibitory factor 3976 NM_001257135
PLAU PLAU PLAU plasminogen activator, urokinase 5328 NM_001145031
IL6 IL6 IL6 interleukin 6 (interferon, beta 2) 3569 NM_000600
MGP MGP MGP matrix Gla protein 4256 NM_000900
> t1 <- t1[ t1$GeneName %in% tmod$GENES$ID, ]
> dim(t1)
[1] 17001 5
> write.csv(t1, file="
1.csv readme.R tt_2_S.csv tt_4_TBaS.csv
2.csv tt_1_TB.csv tt_3_TBvS.csv
> write.csv(t1, file="tt_1_TB_reduced.csv")
> is.null(list())
[1] FALSE
> t0 <- t1[ t1$ProbeName != t1$GeneName, ]
> head(t0)
ProbeName GeneName logFC msd qval
1 A_24_P66027 APOBEC3B -0.7695986 0.3707800 1.03048e-03
3 A_23_P212522 ATP11B 1.0669611 0.7158812 1.39000e-06
5 A_24_P9671 DNAJA1 1.4659264 1.1625038 3.99000e-11
7 A_24_P801451 EHMT2 -0.5620778 0.4406253 1.23000e-10
8 A_32_P30710 RPL23 1.5344275 1.0618922 3.91000e-07
11 A_32_P86028 RPS13 1.1083269 0.7598460 5.86000e-07
> t0 <- read.csv("tt_1_TB.csv")
head> head(t0)
X Row Col Start
1 A_24_P66027 1 12 978
2 A_32_P77178 1 13 0
3 A_23_P212522 1 14 6520
4 A_24_P934473 1 15 1287
5 A_24_P9671 1 16 1051
6 A_32_P29551 1 17 0
Sequence ProbeUID
1 GCTGCCCGCATCTATGATTACGACCCCCTATATAAGGAGGCGCTGCAAATGCTGCGGGAT 3
2 GGTCAATTTTTGGTCAAAAGTACAGAGAGCATAGAATAAAAGCAAAGATGTGAATGTCTC 5
3 ATTTTCTAACTGTCCTCTTTCTTGGGTCTAAAGCTCATAATACACAAAGGCTTCCAGACC 7
4 AAGCCAAGTACTTTAGAGAAGAAAAACGGTCTCAGCTGAACCTGTAGTGAGAGCATGCAG 9
5 ATCCAGGTCAGATTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAA 11
6 CCTCTGTCTGGCTTTCTGGATCCTTAGATGAATTGCAGTTGGATTGGAATTTGGCACAAA 13
ControlType ProbeName GeneName SystematicName
1 0 A_24_P66027 APOBEC3B NM_004900
2 0 A_32_P77178 A_32_P77178 A_32_P77178
3 0 A_23_P212522 ATP11B NM_014616
4 0 A_24_P934473 LOC100132006 BX537921
5 0 A_24_P9671 DNAJA1 NM_001539
6 0 A_32_P29551 A_32_P29551 A_32_P29551
Description
1 ref|Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B (APOBEC3B), mRNA [NM_004900]
2 Unknown
3 ref|Homo sapiens ATPase, class VI, type 11B (ATP11B), mRNA [NM_014616]
4 gb|Homo sapiens mRNA; cDNA DKFZp686E20147 (from clone DKFZp686E20147) [BX537921]
5 ref|Homo sapiens DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1), mRNA [NM_001539]
6 Unknown
logFC t msd SE d ciL
1 -0.76959856 -3.8927979 0.37077998 0.19769805 -0.35806445 -1.1684171
2 0.04476325 0.2928927 -0.26354567 0.15283158 0.01610013 -0.2635457
3 1.06696108 6.1307780 0.71588118 0.17403355 0.43699467 0.7158812
4 -0.50767548 -8.8978381 0.39257565 0.05705605 -0.06816830 -0.6227753
5 1.46592639 9.7462445 1.16250385 0.15040936 0.51889752 1.1625038
6 -0.11563806 -1.4251830 -0.04804478 0.08113909 -0.02208134 -0.2793209
ciR qval
1 -0.37077998 1.030480e-03
2 0.35307217 8.392085e-01
3 1.41804099 1.390000e-06
4 -0.39257565 4.150000e-10
5 1.76934894 3.990000e-11
6 0.04804478 2.515534e-01
> head(t1)
ProbeName GeneName logFC msd qval
1 A_24_P66027 APOBEC3B -0.7695986 0.3707800 1.03048e-03
3 A_23_P212522 ATP11B 1.0669611 0.7158812 1.39000e-06
5 A_24_P9671 DNAJA1 1.4659264 1.1625038 3.99000e-11
7 A_24_P801451 EHMT2 -0.5620778 0.4406253 1.23000e-10
8 A_32_P30710 RPL23 1.5344275 1.0618922 3.91000e-07
11 A_32_P86028 RPS13 1.1083269 0.7598460 5.86000e-07
> foo <- lapply(list(t0, t1), colnames)
> foo
[[1]]
[1] "X" "Row" "Col" "Start"
[5] "Sequence" "ProbeUID" "ControlType" "ProbeName"
[9] "GeneName" "SystematicName" "Description" "logFC"
[13] "t" "msd" "SE" "d"
[17] "ciL" "ciR" "qval"
[[2]]
[1] "ProbeName" "GeneName" "logFC" "msd" "qval"
> intersect(1:10, 8:20)
[1] 8 9 10
> foo <- lapply(list(t0, t1), colnames)
> foo <- c(foo, c("logFC", "msd", "blah"))
> foo
[[1]]
[1] "X" "Row" "Col" "Start"
[5] "Sequence" "ProbeUID" "ControlType" "ProbeName"
[9] "GeneName" "SystematicName" "Description" "logFC"
[13] "t" "msd" "SE" "d"
[17] "ciL" "ciR" "qval"
[[2]]
[1] "ProbeName" "GeneName" "logFC" "msd" "qval"
[[3]]
[1] "logFC"
[[4]]
[1] "msd"
[[5]]
[1] "blah"
> foo <- lapply(list(t0, t1), colnames)
> foo[[3]] <- foo[[1]]
> foo
[[1]]
[1] "X" "Row" "Col" "Start"
[5] "Sequence" "ProbeUID" "ControlType" "ProbeName"
[9] "GeneName" "SystematicName" "Description" "logFC"
[13] "t" "msd" "SE" "d"
[17] "ciL" "ciR" "qval"
[[2]]
[1] "ProbeName" "GeneName" "logFC" "msd" "qval"
[[3]]
[1] "X" "Row" "Col" "Start"
[5] "Sequence" "ProbeUID" "ControlType" "ProbeName"
[9] "GeneName" "SystematicName" "Description" "logFC"
[13] "t" "msd" "SE" "d"
[17] "ciL" "ciR" "qval"
> write.csv(t1, file="tt_1_TB_reduced.csv", col)
col colSums colorConverter colors
col2rgb colnames colorRamp colorspaces
colMeans colnames<- colorRampPalette colours
> write.csv(t1, file="tt_1_TB_reduced.csv", colnames=FALSE)
Fehler in write.table(t1, file = "tt_1_TB_reduced.csv", colnames = FALSE, :
unbenutztes Argument (colnames = FALSE)
> write.csv(t1, file="tt_1_TB_reduced.csv", col.names=FALSE)
Warnmeldung:
In write.csv(t1, file = "tt_1_TB_reduced.csv", col.names = FALSE) :
Versuch ignoriert 'col.names' zu setzen
> write.csv(t1, file="tt_1_TB_reduced.csv", row=FALSE)
row row.names<-.data.frame rownames<-
row.names row.names<-.default rowsum
row.names.data.frame rowMeans rowsum.data.frame
row.names.default rowSums rowsum.default
row.names<- rownames
> write.csv(t1, file="tt_1_TB_reduced.csv", rownames=FALSE)
Fehler in write.table(t1, file = "tt_1_TB_reduced.csv", rownames = FALSE, :
unbenutztes Argument (rownames = FALSE)
> write.csv(t1, file="tt_1_TB_reduced.csv", row.names=FALSE)
> cd /Users/song/code/shiny/example/tt_1_TB_reduced.csv
Fehler: Objekt 'cd' nicht gefunden
> tmodCERNOtest(t1$GeneName[ order(t1$msd, decreasing=T)])
ID Title cerno N1
LI.M32.1 LI.M32.1 platelet activation (II) 140.25899 21
LI.M32.2 LI.M32.2 CORO1A-DEF6 network (I) 114.37612 19
LI.M32.0 LI.M32.0 platelet activation (I) 122.52223 22
LI.M100 LI.M100 MAPK, RAS signaling 68.04119 10
LI.M63 LI.M63 regulation of localization (GO) 74.31434 12
LI.M136 LI.M136 TBA 86.38922 16
LI.M32.7 LI.M32.7 TBA 66.84306 11
LI.M32.8 LI.M32.8 cytoskeletal remodeling 63.20795 10
LI.M32.4 LI.M32.4 CORO1A-DEF6 network (II) 73.39938 14
LI.M32.3 LI.M32.3 KLF12 targets network 75.74043 16
LI.M167 LI.M167 enriched in cell cycle 71.79312 15
LI.M188 LI.M188 TBA 52.69617 10
LI.M32.6 LI.M32.6 TBA 60.06689 13
LI.M192 LI.M192 TBA 55.98512 12
LI.M248 LI.M248 TBA 46.48650 9
LI.M75 LI.M75 antiviral IFN signature 83.72989 22
LI.M215 LI.M215 small GTPase mediated signal transduction 61.88156 15
LI.M55 LI.M55 TBA 51.60176 12
LI.M11.0 LI.M11.0 enriched in monocytes (II) 451.22768 181
LI.M32.5 LI.M32.5 TBA 58.81585 15
LI.M226 LI.M226 proteasome 48.91332 12
LI.M120 LI.M120 TBA 44.40311 11
AUC cES P.Value adj.P.Val
LI.M32.1 0.8442387 3.339500 1.650351e-12 5.710214e-10
LI.M32.2 0.9045088 3.009898 1.406435e-09 2.433133e-07
LI.M32.0 0.8245468 2.784596 2.478871e-09 2.858964e-07
LI.M100 0.8405819 3.402059 3.791148e-07 3.279343e-05
LI.M63 0.8192424 3.096431 4.767788e-07 3.299309e-05
LI.M136 0.8039019 2.699663 6.817799e-07 3.931597e-05
LI.M32.7 0.8983713 3.038321 2.056213e-06 9.709830e-05
LI.M32.8 0.8238091 3.160398 2.245047e-06 9.709830e-05
LI.M32.4 0.8467068 2.621407 6.150221e-06 2.364418e-04
LI.M32.3 0.8107637 2.366888 2.085901e-05 7.217217e-04
LI.M167 0.8027651 2.393104 2.781633e-05 8.749501e-04
LI.M188 0.6613103 2.634808 9.006667e-05 2.596922e-03
LI.M32.6 0.7488184 2.310265 1.642600e-04 4.371844e-03
LI.M192 0.7358139 2.332713 2.302389e-04 5.690190e-03
LI.M248 0.7948174 2.582583 2.518472e-04 5.809274e-03
LI.M75 0.7615854 1.902952 2.842169e-04 6.146190e-03
LI.M215 0.6461251 2.062719 5.416506e-04 1.102418e-02
LI.M55 0.7879933 2.150074 8.815068e-04 1.694452e-02
LI.M11.0 0.5797928 1.246485 9.627760e-04 1.753266e-02
LI.M32.5 0.6866882 1.960528 1.277767e-03 2.210537e-02
LI.M226 0.8425741 2.038055 1.942269e-03 3.200119e-02
LI.M120 0.6786369 2.018323 3.156959e-03 4.965036e-02
> tmodCERNOtest(t0$GeneName[ order(t0$msd, decreasing=T)])
ID Title
LI.M37.0 LI.M37.0 immune activation - generic cluster
LI.M11.0 LI.M11.0 enriched in monocytes (II)
LI.M32.1 LI.M32.1 platelet activation (II)
LI.M32.2 LI.M32.2 CORO1A-DEF6 network (I)
LI.M32.0 LI.M32.0 platelet activation (I)
LI.M4.0 LI.M4.0 cell cycle and transcription
LI.S4 LI.S4 Monocyte surface signature
LI.M136 LI.M136 TBA
LI.M63 LI.M63 regulation of localization (GO)
LI.M100 LI.M100 MAPK, RAS signaling
LI.M32.7 LI.M32.7 TBA
LI.M32.4 LI.M32.4 CORO1A-DEF6 network (II)
LI.M32.3 LI.M32.3 KLF12 targets network
LI.M32.8 LI.M32.8 cytoskeletal remodeling
LI.M5.0 LI.M5.0 regulation of antigen presentation and immune response
LI.M167 LI.M167 enriched in cell cycle
LI.M75 LI.M75 antiviral IFN signature
LI.M118.0 LI.M118.0 enriched in monocytes (IV)
LI.M32.6 LI.M32.6 TBA
LI.M16 LI.M16 TLR and inflammatory signaling
LI.M188 LI.M188 TBA
LI.M192 LI.M192 TBA
LI.M248 LI.M248 TBA
LI.M215 LI.M215 small GTPase mediated signal transduction
LI.M55 LI.M55 TBA
LI.M32.5 LI.M32.5 TBA
LI.M226 LI.M226 proteasome
LI.M216 LI.M216 respiratory electron transport chain (mitochondrion)
LI.M219 LI.M219 respiratory electron transport chain (mitochondrion)
LI.M120 LI.M120 TBA
LI.M174 LI.M174 TBA
LI.M238 LI.M238 respiratory electron transport chain (mitochondrion)
LI.M165 LI.M165 enriched in activated dendritic cells (II)
LI.M113 LI.M113 golgi membrane (I)
LI.M250 LI.M250 spliceosome
LI.M144 LI.M144 cell cycle, ATP binding
LI.M127 LI.M127 type I interferon response
LI.M40 LI.M40 complement and other receptors in DCs
LI.M72.0 LI.M72.0 TBA
LI.M4.3 LI.M4.3 myeloid cell enriched receptors and transporters
LI.M72.1 LI.M72.1 TBA
LI.M48 LI.M48 TBA
LI.M117 LI.M117 cell adhesion (GO)
LI.M118.1 LI.M118.1 enriched in monocytes (surface)
LI.M156.0 LI.M156.0 plasma cells & B cells, immunoglobulins
LI.M128 LI.M128 TBA
LI.M76 LI.M76 DNA repair
LI.M67 LI.M67 activated dendritic cells
LI.S10 LI.S10 Resting dendritic cell surface signature
LI.M37.2 LI.M37.2 endoplasmic reticulum
LI.M23 LI.M23 RA, WNT, CSF receptors network (monocyte)
LI.M237 LI.M237 golgi membrane (II)
LI.M185 LI.M185 TBA
LI.M72.2 LI.M72.2 TBA
LI.M214 LI.M214 TBA
LI.M153 LI.M153 TBA
LI.M147 LI.M147 intracellular transport
LI.M227 LI.M227 translation initiation
LI.M2.1 LI.M2.1 extracellular matrix (II)
LI.M137 LI.M137 TBA
cerno N1 AUC cES P.Value adj.P.Val
LI.M37.0 1016.87461 320 0.6578104 1.588867 1.210212e-19 4.187334e-17
LI.M11.0 620.20165 181 0.6946317 1.713264 7.332673e-16 1.268553e-13
LI.M32.1 159.12933 21 0.8757946 3.788794 1.574626e-15 1.816069e-13
LI.M32.2 134.47308 19 0.9460899 3.538765 1.052846e-12 8.452263e-11
LI.M32.0 144.55455 22 0.8846976 3.285331 1.221425e-12 8.452263e-11
LI.M4.0 889.98815 314 0.6605347 1.417179 2.391333e-11 1.379002e-09
LI.S4 320.16832 90 0.7311278 1.778713 6.181018e-10 3.055189e-08
LI.M136 102.20766 16 0.8638720 3.193989 2.900440e-09 1.254440e-07
LI.M63 85.29818 12 0.8639458 3.554091 8.525998e-09 3.277773e-07
LI.M100 77.55127 10 0.9096588 3.877564 1.018281e-08 3.523254e-07
LI.M32.7 78.49664 11 0.9429988 3.568029 2.858850e-08 8.992384e-07
LI.M32.4 88.35605 14 0.9098567 3.155573 3.574115e-08 1.030537e-06
LI.M32.3 93.04473 16 0.8906742 2.907648 7.195772e-08 1.915182e-06
LI.M32.8 72.24407 10 0.8586572 3.612204 7.801863e-08 1.928175e-06
LI.M5.0 263.71138 77 0.6746456 1.712412 8.937589e-08 2.061604e-06
LI.M167 87.11743 15 0.8690588 2.903914 1.784029e-07 3.857962e-06
LI.M75 108.01484 22 0.8625793 2.454883 2.656426e-07 5.406609e-06
LI.M118.0 197.68206 54 0.7358494 1.830389 3.150329e-07 6.055633e-06
LI.M32.6 72.92687 13 0.8246115 2.804879 2.464149e-06 4.487345e-05
LI.M16 148.87724 40 0.7291598 1.860965 4.705222e-06 8.140034e-05
LI.M188 60.92412 10 0.7554527 3.046206 5.118628e-06 8.433548e-05
LI.M192 67.31722 12 0.8102942 2.804884 5.530820e-06 8.698472e-05
LI.M248 56.03937 9 0.8849678 3.113298 8.785773e-06 1.321686e-04
LI.M215 75.22306 15 0.7427631 2.507435 9.379902e-06 1.352269e-04
LI.M55 65.06166 12 0.8817575 2.710903 1.192130e-05 1.649909e-04
LI.M32.5 73.75499 15 0.7901957 2.458500 1.498763e-05 1.994508e-04
LI.M226 62.61131 12 0.9121995 2.608805 2.708687e-05 3.471132e-04
LI.M216 54.62265 11 0.7996015 2.482848 1.343462e-04 1.660135e-03
LI.M219 72.30725 17 0.7557584 2.126684 1.405243e-04 1.676600e-03
LI.M120 53.96129 11 0.7479604 2.452786 1.665651e-04 1.921051e-03
LI.M174 85.42474 22 0.8373489 1.941471 1.823903e-04 2.035711e-03
LI.M238 70.33922 17 0.8477148 2.068801 2.464610e-04 2.664859e-03
LI.M165 117.42349 35 0.7003983 1.677478 3.340839e-04 3.502819e-03
LI.M113 45.48516 9 0.8934340 2.526953 3.525273e-04 3.587484e-03
LI.M250 50.37950 11 0.8374469 2.289977 5.210093e-04 5.138392e-03
LI.M144 64.75627 16 0.8485002 2.023634 5.346304e-04 5.138392e-03
LI.M127 53.12598 12 0.7679849 2.213582 5.567437e-04 5.206306e-03
LI.M40 55.86287 13 0.7491445 2.148572 5.878147e-04 5.352208e-03
LI.M72.0 75.36764 20 0.8292391 1.884191 6.041812e-04 5.360172e-03
LI.M4.3 100.80596 30 0.7091128 1.680099 7.662417e-04 6.627990e-03
LI.M72.1 62.43762 16 0.8445263 1.951175 1.013592e-03 8.553725e-03
LI.M48 50.58541 12 0.7247854 2.107725 1.192080e-03 9.820467e-03
LI.M117 74.73199 21 0.6268934 1.779333 1.396804e-03 1.123940e-02
LI.M118.1 63.60590 17 0.7776763 1.870762 1.543181e-03 1.213502e-02
LI.M156.0 84.55856 25 0.6207887 1.691171 1.628724e-03 1.252308e-02
LI.M128 46.37490 11 0.8400708 2.107950 1.769180e-03 1.308462e-02
LI.M76 76.37141 22 0.7091464 1.735714 1.777390e-03 1.308462e-02
LI.M67 46.03598 11 0.8009179 2.092545 1.956551e-03 1.410347e-02
LI.S10 197.13896 72 0.6100882 1.369021 2.182257e-03 1.523144e-02
LI.M37.2 64.91703 18 0.7251377 1.803251 2.201076e-03 1.523144e-02
LI.M23 48.36713 12 0.6741209 2.015297 2.272688e-03 1.541863e-02
LI.M237 60.77912 17 0.7906792 1.787621 3.187242e-03 2.120742e-02
LI.M185 48.99906 13 0.8319546 1.884579 4.131125e-03 2.696923e-02
LI.M72.2 46.17067 12 0.8418563 1.923778 4.222585e-03 2.705582e-02
LI.M214 45.86037 12 0.8338718 1.910849 4.601180e-03 2.894560e-02
LI.M153 53.84678 15 0.8039269 1.794893 4.781522e-03 2.954298e-02
LI.M147 58.92335 17 0.7908340 1.733040 5.049847e-03 3.065345e-02
LI.M227 39.84624 10 0.8392455 1.992312 5.223777e-03 3.116253e-02
LI.M2.1 126.51897 45 0.5493387 1.405766 6.749744e-03 3.958325e-02
LI.M137 51.57642 15 0.7949171 1.719214 8.457567e-03 4.877197e-02
>