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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8" />
<title>DrEdGE: Differential Expression Gene Explorer</title>
<style type="text/css">
* {
box-sizing: border-box;
margin: 0;
}
body {
height: 100%;
}
.wrapper {
margin: auto;
max-width: 720px;
display: grid;
min-height: 100vh;
grid-template-rows: auto 1fr auto
}
footer {
text-align: center;
align-self: center;
height: 2em;
}
h1 { margin: 1rem 0 }
p, ul {
line-height: 1.33em;
margin-bottom: 1.33rem
}
p + ul {
margin-top: -1em;
}
.screenshot {
text-align: center;
margin: 3em 0;
}
.screenshot img {
border: 2px solid blue;
}
</style>
</head>
<body>
<div class="wrapper">
<header>
<h1>DrEdGE: Differential Expression Gene Explorer</h1>
</header>
<main>
<p>
<strong>DrEdGE</strong> is a Web-based tool to visualize RNAseq data. It was developed by <a href="mailto:sophia.tintori@gmail.com" class="email">Sophia Tintori</a> and <a href="mailto:ptgolden0@gmail.com" class="email">Patrick Golden</a>. The code was written by Patrick Golden from 2015-2019. All source code is available on <a href="https://github.com/ptgolden/dredge">GitHub</a> under the <a href="https://www.gnu.org/licenses/agpl.txt">AGPL</a> license.
</p>
<p class="screenshot">
<a href="dredge.png">
<img alt="DrEdGE screenshot" title="DrEdGE screenshot. Click to enlarge" src="dredge-thumb.png" />
</a>
</p>
<p>
Initial development of the project resulted in visualizations of three different RNAseq datasets:
</p>
<ul>
<li><a href="human-neuronal-tissue">Human neuronal tissue</a></li>
<li><a href="mouse-embryonic-tissue">Mouse embryonic tissue</a></li>
<li><a href="c-elegans-timecourse">Worm embryo timecourse</a></li>
</ul>
<p>If you have deployed DrEdGE on your own, please email Sophia or Patrick to list your DrEdGE deployment on this site.</p>
<h2>Visualize your own data</h2>
<p>To create your own DrEdGE page, download the latest release: <a href="%%VERSION%%.zip">%%VERSION%%.zip</a></p>
<p>DrEdGE is designed to work in a Web browser using exclusively static files. All of the files required to configure and run your own DrEdGE page can be found in the zip archive above. Extract it somewhere on your computer, open the <code>index.html</code> file inside, and follow the instructions to set up DrEdGE with your own RNASeq dataset.</p>
</main>
<footer>
<i>Website last updated %%UPDATED%%</i>
</footer>
</div>
</body>
</html>