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environment.yml
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environment.yml
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name: graph
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- atk-1.0=2.38.0=h1d18e73_1
- bzip2=1.0.8=h0d85af4_4
- ca-certificates=2022.12.7=h033912b_0
- cairo=1.16.0=h297c08e_1015
- click=8.1.3=unix_pyhd8ed1ab_2
- expat=2.5.0=hf0c8a7f_1
- flask=2.2.3=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h5bb23bf_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h3f81eb7_1
- fribidi=1.0.10=hbcb3906_0
- gdk-pixbuf=2.42.10=hff535ac_2
- gettext=0.21.1=h8a4c099_0
- giflib=5.2.1=hb7f2c08_3
- graphite2=1.3.13=h2e338ed_1001
- graphviz=7.1.0=hc51f7b9_0
- gtk2=2.24.33=h7c1209e_2
- gts=0.7.6=hccb3bdf_2
- harfbuzz=6.0.0=hc28939c_1
- icu=72.1=h7336db1_0
- importlib-metadata=6.3.0=pyha770c72_0
- itsdangerous=2.1.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- lerc=4.0.0=hb486fe8_0
- libblas=3.9.0=16_osx64_openblas
- libcblas=3.9.0=16_osx64_openblas
- libcxx=16.0.1=h71dddab_0
- libdeflate=1.18=hac1461d_0
- libexpat=2.5.0=hf0c8a7f_1
- libffi=3.4.2=h0d85af4_5
- libgd=2.3.3=h3d994df_6
- libgfortran=5.0.0=11_3_0_h97931a8_31
- libgfortran5=12.2.0=he409387_31
- libglib=2.74.1=h4c723e1_1
- libiconv=1.17=hac89ed1_0
- libjpeg-turbo=2.1.5.1=hb7f2c08_0
- liblapack=3.9.0=16_osx64_openblas
- libopenblas=0.3.21=openmp_h429af6e_3
- libpng=1.6.39=ha978bb4_0
- librsvg=2.54.4=h3d48ba6_0
- libsqlite=3.40.0=ha978bb4_0
- libtiff=4.5.0=hedf67fa_6
- libtool=2.4.7=hf0c8a7f_0
- libwebp=1.3.0=ha9aa8fa_0
- libwebp-base=1.3.0=hb7f2c08_0
- libxml2=2.10.4=h554bb67_0
- libzlib=1.2.13=hfd90126_4
- llvm-openmp=16.0.2=hff08bdf_0
- markupsafe=2.1.2=py310h90acd4f_0
- ncurses=6.3=h96cf925_1
- networkx=3.1=pyhd8ed1ab_0
- openssl=3.1.0=h8a1eda9_2
- pandas=2.0.1=py310h5e4fcda_0
- pango=1.50.14=hbd9bf65_0
- pcre2=10.40=h1c4e4bc_0
- pip=23.0.1=pyhd8ed1ab_0
- pixman=0.40.0=hbcb3906_0
- pydot=1.4.2=py310h2ec42d9_3
- pyparsing=3.0.9=pyhd8ed1ab_0
- python=3.10.10=he7542f4_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2023.3=pyhd8ed1ab_0
- readline=8.2=h9e318b2_1
- setuptools=67.6.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- tk=8.6.12=h5dbffcc_0
- tzdata=2023c=h71feb2d_0
- werkzeug=2.2.3=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- xz=5.2.6=h775f41a_0
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=hfd90126_4
- zstd=1.5.2=hbc0c0cd_6
- pip:
- anndata==0.9.1
- attrs==22.2.0
- contourpy==1.0.7
- cycler==0.11.0
- fonttools==4.39.3
- h5py==3.8.0
- joblib==1.2.0
- jsonschema==4.17.3
- kiwisolver==1.4.4
- llvmlite==0.39.1
- matplotlib==3.7.1
- natsort==8.3.1
- numba==0.56.4
- numpy==1.23.5
- packaging==23.1
- patsy==0.5.3
- pillow==9.5.0
- pynndescent==0.5.10
- pyrsistent==0.19.3
- python-graphviz==0.20.1
- scanpy==1.9.3
- scikit-learn==1.2.2
- scipy==1.10.1
- seaborn==0.12.2
- session-info==1.0.0
- statsmodels==0.14.0rc0
- stdlib-list==0.8.0
- threadpoolctl==3.1.0
- tqdm==4.65.0
- umap-learn==0.5.3
prefix: /Users/christophebecavin/miniconda3/envs/graph