From 224f9e6dcbe3b2040ef529e241572497180b90a4 Mon Sep 17 00:00:00 2001 From: ddl-joyce-zhao Date: Fri, 25 Oct 2024 15:38:14 -0400 Subject: [PATCH 1/6] loosen pinecone version (#146) * loosen pinecone client version * Update Makefile --- Makefile | 4 +- domino_data/vectordb.py | 4 +- poetry.lock | 1083 +++++++++++++++++++++++---------------- pyproject.toml | 4 +- requirements.txt | 2 +- tests/test_vectordb.py | 8 +- 6 files changed, 646 insertions(+), 459 deletions(-) diff --git a/Makefile b/Makefile index ca19294..914a251 100644 --- a/Makefile +++ b/Makefile @@ -82,8 +82,8 @@ mypy: .PHONY: check-safety check-safety: poetry check - # TODO remove numpy ignore flag when fixed - poetry run safety check --full-report -i 44715 -i 51668 + # TODO remove pip ignore flag when fixed + poetry run safety check --full-report -i 62044 -i 67599 poetry run bandit -ll --recursive domino_data tests .PHONY: lint diff --git a/domino_data/vectordb.py b/domino_data/vectordb.py index d1a5770..e562b84 100644 --- a/domino_data/vectordb.py +++ b/domino_data/vectordb.py @@ -64,7 +64,7 @@ def get_host_from_settings(self, index, variables=None, servers=None): def domino_pinecone3x_init_params(datasource_name: str) -> Dict[str, Union[str, Dict[str, str]]]: - """Wrap the parameters to initialize a Pinecone 3.x client + """Wrap the parameters to initialize a Pinecone 3.x and above client Args: datasource_name: the name of the Pinecone data source @@ -82,7 +82,7 @@ def domino_pinecone3x_init_params(datasource_name: str) -> Dict[str, Union[str, def domino_pinecone3x_index_params( datasource_name: str, index_name: str ) -> Dict[str, Union[str, Dict[str, str]]]: - """Wrap the parameters to target an index in the Pinecone 3.x client + """Wrap the parameters to target an index in the Pinecone 3.x and above client Args: datasource_name: the name of the Pinecone data source diff --git a/poetry.lock b/poetry.lock index 735e6e7..b310d41 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,13 +13,13 @@ files = 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"ab56522168e74bc95b4b71c3d72c9cfbd5f1bdd0b8d6e3a4f1543b152acc44b5" diff --git a/pyproject.toml b/pyproject.toml index ef274a3..e1f4637 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "dominodatalab-data" -version = "5.12.0.dev1" +version = "6.0.0.dev1" description = "Domino Data API for interacting with Domino Data features" readme = "README.md" authors = [ @@ -83,7 +83,7 @@ feast = ">=0.36.0" GitPython = "^3.1.41" [tool.poetry.group.vectordbs.dependencies] -pinecone-client = "^2.2.4" +pinecone-client = ">=2.2.4" [tool.black] # https://github.com/psf/black diff --git a/requirements.txt b/requirements.txt index 14cb417..b0f3b65 100644 --- a/requirements.txt +++ b/requirements.txt @@ -12,7 +12,7 @@ idna==3.7 ; python_version >= "3.9" and python_version < "4.0" loguru==0.5.3 ; python_version >= "3.9" and python_version < "4.0" numpy==1.24.4 ; python_version >= "3.9" and python_version < "4.0" pandas==2.2.2 ; python_version >= "3.9" and python_version < "4.0" -pyarrow==16.0.0 ; python_version >= "3.9" and python_version < "4.0" +pyarrow==16.1.0 ; python_version >= "3.9" and python_version < "4.0" python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4.0" pytz==2024.1 ; python_version >= "3.9" and python_version < "4.0" six==1.16.0 ; python_version >= "3.9" and python_version < "4.0" diff --git a/tests/test_vectordb.py b/tests/test_vectordb.py index cb5a6ce..24711a4 100644 --- a/tests/test_vectordb.py +++ b/tests/test_vectordb.py @@ -16,13 +16,13 @@ def test_get_host_from_setting(): test_data_api_gateway = "http://test_domino_api_gateway:9999" domino_conf = DominoPineconeConfiguration(datasource=test_data_source) - assert domino_conf.host == "http://unknown-unknown.svc.unknown.pinecone.io" + assert domino_conf.host == "http://api.pinecone.io" assert domino_conf.proxy == "http://127.0.0.1:8766" assert domino_conf.proxy_headers["X-Domino-Datasource"] == test_data_source os.environ["DOMINO_DATA_API_GATEWAY"] = test_data_api_gateway domino_conf = DominoPineconeConfiguration(datasource=test_data_source) - assert domino_conf.host == f"http://unknown-unknown.svc.unknown.pinecone.io" + assert domino_conf.host == f"http://api.pinecone.io" assert domino_conf.proxy == test_data_api_gateway assert domino_conf.proxy_headers["X-Domino-Datasource"] == test_data_source @@ -37,10 +37,10 @@ def test_get_host_from_setting(): "environment": test_environment, }, ) - assert host == "http://test_index-test_project.svc.test_environment.pinecone.io" + assert host == "http://api.pinecone.io" host = domino_conf.get_host_from_settings(None, variables={}) - assert host == f"http://unknown-unknown.svc.unknown.pinecone.io" + assert host == f"http://api.pinecone.io" def test_get_domino_pinecone3x_init_params(): From fddc71c479c370b3124dc31386722141d1e64406 Mon Sep 17 00:00:00 2001 From: ddl-joyce-zhao Date: Fri, 25 Oct 2024 16:28:24 -0400 Subject: [PATCH 2/6] updated dependencies --- poetry.lock | 3847 +++++++++++++++++++++++----------------------- pyproject.toml | 2 +- requirements.txt | 28 +- 3 files changed, 1914 insertions(+), 1963 deletions(-) diff --git a/poetry.lock b/poetry.lock index b310d41..e03ffcc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -24,13 +24,13 @@ files = [ [[package]] name = "anyio" -version = "4.3.0" +version = "4.6.2.post1" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"}, - {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"}, + {file = "anyio-4.6.2.post1-py3-none-any.whl", hash = "sha256:6d170c36fba3bdd840c73d3868c1e777e33676a69c3a72cf0a0d5d6d8009b61d"}, + {file = "anyio-4.6.2.post1.tar.gz", hash = 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a/requirements.txt b/requirements.txt index b0f3b65..a367c4a 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,23 +1,23 @@ -anyio==4.3.0 ; python_version >= "3.9" and python_version < "4.0" -attrs==23.2.0 ; python_version >= "3.9" and python_version < "4.0" +anyio==4.6.2.post1 ; python_version >= "3.9" and python_version < "4.0" +attrs==24.2.0 ; python_version >= "3.9" and python_version < "4.0" backoff==2.2.1 ; python_version >= "3.9" and python_version < "4.0" bson==0.5.10 ; python_version >= "3.9" and python_version < "4.0" -certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4.0" +certifi==2024.8.30 ; python_version >= "3.9" and python_version < "4.0" colorama==0.4.6 ; python_version >= "3.9" and python_version < "4.0" and sys_platform == "win32" -exceptiongroup==1.2.1 ; python_version >= "3.9" and python_version < "3.11" +exceptiongroup==1.2.2 ; python_version >= "3.9" and python_version < "3.11" h11==0.14.0 ; python_version >= "3.9" and python_version < 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Update me [tool.poetry.dependencies] python = "^3.9" pandas = ">=1.3.0" -httpx = ">=0.23.0" +httpx = ">=0.24.0" attrs = ">=20.1.0" python-dateutil = "^2.8.0" pyarrow = ">=15.0.2" @@ -72,7 +72,7 @@ pytest-cov = "^4.1.0" pytest-recording = "^0.12.2" pyupgrade = "^2.38.4" respx = "^0.20.1" -safety = "^2.3.5" +safety = ">=3" sphinx-rtd-theme = "^1.2.2" types-PyYAML = "^6.0.12.11" types-python-dateutil = "^2.8.19.14" From a02a41ed4a08303a1e5fd92d67e4943ee4e7a0d2 Mon Sep 17 00:00:00 2001 From: ddl-joyce-zhao Date: Mon, 4 Nov 2024 15:41:10 -0500 Subject: [PATCH 4/6] Limited the pinecone client versiion pinecone-client 5.0 contains breaking changes. openapi_config is removed --- Makefile | 2 +- poetry.lock | 843 +++++++++++++++++++++++++---------------------- pyproject.toml | 2 +- requirements.txt | 4 +- 4 files changed, 456 insertions(+), 395 deletions(-) diff --git a/Makefile b/Makefile index 914a251..f344070 100644 --- a/Makefile +++ b/Makefile @@ -83,7 +83,7 @@ mypy: check-safety: poetry 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>= "3.9" and python_version < "4.0" loguru==0.5.3 ; python_version >= "3.9" and python_version < "4.0" -numpy==1.26.4 ; python_version >= "3.9" and python_version < "4.0" +numpy==1.26.4 ; python_version >= "3.9" and python_version <= "3.11" or python_version >= "3.12" and python_version < "4.0" pandas==2.2.3 ; python_version >= "3.9" and python_version < "4.0" -pyarrow==17.0.0 ; python_version >= "3.9" and python_version < "4.0" +pyarrow==18.0.0 ; python_version >= "3.9" and python_version < "4.0" python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4.0" pytz==2024.2 ; python_version >= "3.9" and python_version < "4.0" six==1.16.0 ; python_version >= "3.9" and python_version < "4.0" From c5a6f912f8d3f20e3dd16169fff3a8f41856c290 Mon Sep 17 00:00:00 2001 From: ddl-joyce-zhao Date: Mon, 4 Nov 2024 16:19:31 -0500 Subject: [PATCH 5/6] Fixed the safety check error --- Makefile | 2 +- domino_data/auth.py | 3 ++- domino_data/data_sources.py | 7 ++++--- 3 files changed, 7 insertions(+), 5 deletions(-) diff --git a/Makefile b/Makefile index f344070..0396df5 100644 --- a/Makefile +++ b/Makefile @@ -83,7 +83,7 @@ mypy: check-safety: poetry check # TODO remove pip ignore flag when fixed - poetry run safety check --full-report -i 62044 -i 72809 -i 70612 + poetry run safety check --full-report -i 62044 -i 70612 poetry run bandit -ll --recursive domino_data tests .PHONY: lint diff --git a/domino_data/auth.py b/domino_data/auth.py index 222c441..f75c2a5 100644 --- a/domino_data/auth.py +++ b/domino_data/auth.py @@ -7,6 +7,7 @@ import attr import backoff import httpx +from httpx._config import DEFAULT_TIMEOUT_CONFIG from pyarrow import flight from datasource_api_client.client import Client @@ -26,7 +27,7 @@ def get_jwt_token(url: str) -> str: Raises: HTTPStatusError: if the API returns an error """ - resp = httpx.get(f"{url}/access-token") + resp = httpx.get(f"{url}/access-token", timeout=DEFAULT_TIMEOUT_CONFIG) resp.raise_for_status() return resp.read().decode("ascii") diff --git a/domino_data/data_sources.py b/domino_data/data_sources.py index 4556972..dc9058e 100644 --- a/domino_data/data_sources.py +++ b/domino_data/data_sources.py @@ -11,6 +11,7 @@ import httpx import pandas import urllib3 +from httpx._config import DEFAULT_TIMEOUT_CONFIG from pyarrow import ArrowException, flight, parquet import domino_data.configuration_gen @@ -348,11 +349,11 @@ def http(self) -> httpx.Client: DatasourceDtoDataSourceType.ADLSCONFIG.value, DatasourceDtoDataSourceType.AZUREBLOBSTORAGECONFIG.value, ): - self._httpx = httpx.Client(headers=ADLS_HEADERS, verify=context) + self._httpx = httpx.Client(headers=ADLS_HEADERS, verify=context, timeout=DEFAULT_TIMEOUT_CONFIG) elif self.datasource_type == DatasourceDtoDataSourceType.GENERICS3CONFIG.value: - self._httpx = httpx.Client(verify=False) # nosec + self._httpx = httpx.Client(verify=False, timeout=DEFAULT_TIMEOUT_CONFIG) # nosec else: - self._httpx = httpx.Client(verify=context) + self._httpx = httpx.Client(verify=context, timeout=DEFAULT_TIMEOUT_CONFIG) return self._httpx def pool_manager(self) -> urllib3.PoolManager: From 185252c2ff93bc6cb364f48f9095f0dd17b163a8 Mon Sep 17 00:00:00 2001 From: ddl-joyce-zhao Date: Mon, 4 Nov 2024 16:27:02 -0500 Subject: [PATCH 6/6] fixed the code style --- domino_data/data_sources.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/domino_data/data_sources.py b/domino_data/data_sources.py index dc9058e..a0ab750 100644 --- a/domino_data/data_sources.py +++ b/domino_data/data_sources.py @@ -349,7 +349,9 @@ def http(self) -> httpx.Client: DatasourceDtoDataSourceType.ADLSCONFIG.value, DatasourceDtoDataSourceType.AZUREBLOBSTORAGECONFIG.value, ): - self._httpx = httpx.Client(headers=ADLS_HEADERS, verify=context, timeout=DEFAULT_TIMEOUT_CONFIG) + self._httpx = httpx.Client( + headers=ADLS_HEADERS, verify=context, timeout=DEFAULT_TIMEOUT_CONFIG + ) elif self.datasource_type == DatasourceDtoDataSourceType.GENERICS3CONFIG.value: self._httpx = httpx.Client(verify=False, timeout=DEFAULT_TIMEOUT_CONFIG) # nosec else: