diff --git a/.coveragerc b/.coveragerc index 4be8c55..af167bc 100644 --- a/.coveragerc +++ b/.coveragerc @@ -1,8 +1,6 @@ [run] source=cassis omit= - setup.py cassis/__init__.py - cassis/__version__.py tests/* docs/* diff --git a/.github/workflows/publish_to_pypi.yml b/.github/workflows/publish_to_pypi.yml index db28dfa..90c710e 100644 --- a/.github/workflows/publish_to_pypi.yml +++ b/.github/workflows/publish_to_pypi.yml @@ -15,13 +15,12 @@ jobs: python-version: '3.11' - name: Install dependencies run: | - pip install --upgrade -e .[test] + pip install poetry + make dependencies - name: Run tests - run: | - pytest + run: make unit-tests - name: Build package - run: | - python setup.py sdist + run: make build - name: Publish package to TestPyPI if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') uses: pypa/gh-action-pypi-publish@release/v1 diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml index 30844f5..a78e7e3 100644 --- a/.github/workflows/run_tests.yml +++ b/.github/workflows/run_tests.yml @@ -12,7 +12,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] + python-version: ['3.8', '3.9', '3.10', '3.11'] steps: - uses: actions/checkout@v4 @@ -22,17 +22,14 @@ jobs: python-version: ${{ matrix.python-version }} - name: Install dependencies run: | - pip install --upgrade -e .[test] - pip install flake8 + pip install poetry + make dependencies + - name: Lint with flake8 - run: | - # stop the build if there are Python syntax errors or undefined names - flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics - # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide - flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics + run: make lint + - name: Run tests - run: | - pytest --cov=./ --cov-report=xml + run: make coverage - name: Upload coverage to Codecov uses: codecov/codecov-action@v4 diff --git a/.readthedocs.yml b/.readthedocs.yml index 8fd7006..e1743e7 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -4,13 +4,10 @@ build: os: ubuntu-22.04 tools: python: "3.11" - + jobs: + post_create_environment: + - python -m pip install poetry + post_install: + - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry install --only main,docs sphinx: configuration: docs/conf.py - -python: - install: - - method: pip - path: . - extra_requirements: - - doc diff --git a/Makefile b/Makefile index d5528c4..0428116 100644 --- a/Makefile +++ b/Makefile @@ -1,13 +1,45 @@ +.PHONY: docs tests PYTHON_FILES = cassis tests -test: - python -m pytest -m "not performance" tests/ +# Dependencies +dependencies: + poetry install +# Tests +unit-tests: + poetry run py.test --cov=cassis --cov-branch --cov-fail-under=90 tests + +tests: unit-tests integ-tests + +coverage: + poetry run py.test --cov=cassis --cov-branch --cov-fail-under=90 --cov-report=xml:coverage.xml -m "not performance" tests + +# Static analysis/linting format: - black -l 120 cassis/ - black -l 120 tests/ - isort --profile black $(PYTHON_FILES) --multi-line=3 --trailing-comma --force-grid-wrap=0 --use-parentheses --line-width=120 + poetry run ruff format $(PYTHON_FILES) + +lint: + # stop the build if there are Python syntax errors or undefined names + poetry run ruff check --select=E9,F63,F7,F82 --output-format=full $(PYTHON_FILES) + # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide + # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics + poetry run ruff check --exit-zero $(PYTHON_FILES) + +# Docs +docs: + cd docs && make html + +# Building and publishing +build: unit-tests lint + poetry build + +publish: build + poetry publish + +# CI +ci-publish: + poetry publish --build --username "${PYPI_USERNAME}" --password "${PYPI_PASSWORD}" --no-interaction -html: - cd docs && make html \ No newline at end of file +ci-bump-version: + poetry run bump2version patch diff --git a/README.rst b/README.rst index 288f32f..bac2d79 100644 --- a/README.rst +++ b/README.rst @@ -489,9 +489,8 @@ Release - Make sure all issues for the milestone are completed, otherwise move them to the next - Checkout the ``main`` branch -- Bump the version in ``cassis/__version__.py`` to a stable one, e.g. ``__version__ = "0.6.0"``, commit and push, wait until the build completed. An example commit message would be ``No issue. Release 0.6.0`` +- Bump the version in ``pyproject.toml`` to a stable one, e.g. ``__version__ = "0.6.0"``, commit and push, wait until the build completed. An example commit message would be ``No issue. Release 0.6.0`` - Create a tag for that version via e.g. ``git tag v0.6.0`` and push the tags via ``git push --tags``. Pushing a tag triggers the release to pypi -- Bump the version in ``cassis/__version__.py`` to the next development version, e.g. ``0.7.0-dev``, commit and push that. An example commit message would be ``No issue. Bump version after release`` +- Bump the version in ``pyproject.toml`` to the next development version, e.g. ``0.7.0-dev``, commit and push that. An example commit message would be ``No issue. Bump version after release`` - Once the build has completed and pypi accepted the new version, go to the Github release and write the changelog based on the issues in the respective milestone - Create a new milestone for the next version - diff --git a/cassis/__version__.py b/cassis/__version__.py deleted file mode 100644 index 2aceaf4..0000000 --- a/cassis/__version__.py +++ /dev/null @@ -1 +0,0 @@ -__version__ = "0.10.0-dev" diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..5225f3e --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1119 @@ +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. + +[[package]] +name = "alabaster" +version = "0.7.13" +description = "A configurable sidebar-enabled Sphinx theme" +optional = false +python-versions = ">=3.6" +files = [ + {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, + {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, +] + +[[package]] +name = "attrs" +version = "21.4.0" +description = "Classes Without Boilerplate" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +files = [ + {file = "attrs-21.4.0-py2.py3-none-any.whl", hash = "sha256:2d27e3784d7a565d36ab851fe94887c5eccd6a463168875832a1be79c82828b4"}, + {file = "attrs-21.4.0.tar.gz", hash = "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd"}, +] + +[package.extras] +dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "sphinx", "sphinx-notfound-page", "zope.interface"] +docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] +tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "zope.interface"] +tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six"] + +[[package]] +name = "babel" +version = "2.15.0" +description = "Internationalization utilities" +optional = false +python-versions = ">=3.8" +files = [ + {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"}, + {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"}, +] + +[package.dependencies] +pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""} + +[package.extras] +dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] + +[[package]] +name = "certifi" +version = "2024.2.2" +description = "Python package for providing Mozilla's CA Bundle." +optional = false +python-versions = ">=3.6" +files = [ + {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"}, + {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"}, +] + +[[package]] +name = "charset-normalizer" +version = "3.3.2" +description = "The Real First Universal Charset Detector. 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+python-versions = ">=3.8.0" +content-hash = "c4a5d01f8ac997ccf8f09ee5bf9035a9dbeb44889f83177650d5f0f4d2fdfcec" diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..c10d3f1 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,65 @@ +[tool.poetry] +name = "dkpro-cassis" +version = "0.10.0-dev" +readme = "README.rst" +homepage = "https://dkpro.github.io" +repository = "https://github.com/dkpro/dkpro-cassis" +documentation = "https://cassis.readthedocs.io" +description = "UIMA CAS processing library in Python" +authors = ["The DKPro cassis team"] +maintainers = [ "Richard Eckart de Castilho" ] +license = "Apache-2.0" +packages = [ + { include = "cassis" }, +] +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Developers", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: Apache Software License", + "Programming Language :: Python :: 3 :: Only", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Topic :: Software Development :: Libraries", + "Topic :: Scientific/Engineering :: Human Machine Interfaces", + "Topic :: Text Processing :: Linguistic" +] + +[tool.poetry.dependencies] +python = ">=3.8.0" +lxml = "^4.9.1" +attrs = "^21.2,<24" +sortedcontainers = "==2.4.*" +toposort = "==1.7" +more-itertools = "^8.12,<9" +deprecation = "==2.1.*" +importlib_resources = "==5.4.*" + +[tool.poetry.dev-dependencies] +pytest = "^7.2" +tox = "==3.24.*" +lxml-asserts = "==0.1.*" +pytest-lazy-fixture = "==0.6.*" +pytest-cov = "^3.0" +codecov = "^2.1" +rstcheck = "==3.3.*" +docutils = "!=0.21" +ruff = "^0.4.3" + +[tool.poetry.group.docs.dependencies] +sphinx = "^7.1.2" +sphinx-autodoc-typehints = "^1.25.3" +sphinx-rtd-theme = "^2.0.0" + +[tool.ruff] +line-length = 120 +target-version = "py38" + +[tool.ruff.lint.per-file-ignores] +"**/{tests,docs,tools}/*" = [ "F403", "F405" ] + +[build-system] +requires = ["poetry_core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/setup.py b/setup.py deleted file mode 100644 index 7f28cec..0000000 --- a/setup.py +++ /dev/null @@ -1,127 +0,0 @@ -# !/usr/bin/env python -# -*- coding: utf-8 -*- - -# Note: To use the "upload" functionality of this file, you must: -# $ pip install twine - -import io -import os -import sys -from shutil import rmtree - -from setuptools import setup, Command, find_packages - -# Package meta-data. -NAME = "dkpro-cassis" -DESCRIPTION = "UIMA CAS processing library in Python" -HOMEPAGE = "https://dkpro.github.io" -EMAIL = "dkpro-core-user@googlegroups.com" -AUTHOR = "The DKPro cassis team" -REQUIRES_PYTHON = ">=3.7.0" - -install_requires = [ - "lxml~=4.9.1", - "attrs>=21.2,<24", - "sortedcontainers==2.4.*", - "toposort==1.7", - "more-itertools>=8.12,<9", - "deprecation==2.1.*", - "importlib_resources==5.4.*" -] - -test_dependencies = [ - "tox==3.24.*", - "pytest==6.2.*", - "lxml-asserts==0.1.*", - "pytest-lazy-fixture==0.6.*", - "codecov==2.1.*", - "pytest-cov==3.0.*", - "rstcheck==3.3.*" -] - -dev_dependencies = [ - "black==21.12b0", - "isort==5.10.*" -] - -doc_dependencies = [ - "sphinx", - "sphinx-autodoc-typehints", - "sphinx-rtd-theme" -] - -extras = { - "test": test_dependencies, - "dev": dev_dependencies, - "doc": doc_dependencies -} - -# The rest you shouldn"t have to touch too much :) -# ------------------------------------------------ -# Except, perhaps the License and Trove Classifiers! -# If you do change the License, remember to change the Trove Classifier for that! - -here = os.path.abspath(os.path.dirname(__file__)) - -# Import the README and use it as the long-description. -# Note: this will only work if "README.rst" is present in your MANIFEST.in file! -try: - with io.open(os.path.join(here, "README.rst"), encoding="utf-8") as f: - long_description = "\n" + f.read() -except FileNotFoundError: - long_description = DESCRIPTION - -# Load the package"s __version__.py module as a dictionary. -about = {} -with open(os.path.join(here, "cassis", "__version__.py")) as f: - exec(f.read(), about) - - -# Where the magic happens: -setup( - name=NAME, - version=about["__version__"], - description=DESCRIPTION, - long_description=long_description, - long_description_content_type="text/x-rst", - author=AUTHOR, - author_email=EMAIL, - python_requires=REQUIRES_PYTHON, - url=HOMEPAGE, - keywords="uima dkpro cas xmi", - - project_urls={ - "Bug Tracker": "https://github.com/dkpro/dkpro-cassis/issues", - "Documentation": "https://cassis.readthedocs.org/", - "Source Code": "https://github.com/dkpro/dkpro-cassis", - }, - - packages=find_packages(exclude="tests"), - package_data={"cassis": ["resources/*.xml"]}, - - install_requires=install_requires, - test_suite="tests", - - tests_require=test_dependencies, - extras_require=extras, - - include_package_data=True, - license="Apache License 2.0", - classifiers=[ - # Trove classifiers - # Full list: https://pypi.python.org/pypi?%3Aaction=list_classifiers - "Development Status :: 4 - Beta", - "Intended Audience :: Developers", - "Intended Audience :: Science/Research", - "License :: OSI Approved :: Apache Software License", - "Programming Language :: Python :: 3 :: Only", - "Programming Language :: Python :: 3.7", - "Programming Language :: Python :: 3.8", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", - "Topic :: Software Development :: Libraries", - "Topic :: Scientific/Engineering :: Human Machine Interfaces", - "Topic :: Text Processing :: Linguistic" - ], -)