diff --git a/bntseq.c b/bntseq.c index 98a5a494..adcd2d78 100644 --- a/bntseq.c +++ b/bntseq.c @@ -29,6 +29,7 @@ #include <stdlib.h> #include <string.h> #include <zlib.h> +#include <unistd.h> #include "bntseq.h" #include "main.h" #include "utils.h" diff --git a/bwtsw2_aux.c b/bwtsw2_aux.c index 5d57ba85..4ac11fdb 100644 --- a/bwtsw2_aux.c +++ b/bwtsw2_aux.c @@ -574,7 +574,7 @@ static void bsw2_aln_core(bsw2seq_t *_seq, const bsw2opt_t *_opt, const bntseq_t rseq[1][i] = c; } if (l - k < opt.t) { // too few unambiguous bases - buf[x] = 0; + buf[x] = calloc(1, sizeof(bwtsw2_t)); free(seq[0]); continue; } // alignment diff --git a/main.c b/main.c index 3e9a6d48..d15d14ff 100644 --- a/main.c +++ b/main.c @@ -4,7 +4,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.6.0-r85" +#define PACKAGE_VERSION "0.6.0-r89-dev" #endif static int usage()