From f433ef4339305de5d6cd5b60e7e61e30f16f0503 Mon Sep 17 00:00:00 2001
From: Jeremy Kubica <104161096+jeremykubica@users.noreply.github.com>
Date: Tue, 17 Dec 2024 08:41:42 -0500
Subject: [PATCH 1/2] Revert "Merge pull request #754 from
 dirac-institute/upgrade_numpy"

This reverts commit c14abe7d0a5eb7d6af76b178f78948a034b83de1, reversing
changes made to 39f025bf4ceec00c346a16fd09ac021461402077.
---
 include/eigen  |  2 +-
 lib/pybind11   |  2 +-
 pyproject.toml | 26 ++++++++++++++------------
 3 files changed, 16 insertions(+), 14 deletions(-)

diff --git a/include/eigen b/include/eigen
index c01ff4531..6d829e766 160000
--- a/include/eigen
+++ b/include/eigen
@@ -1 +1 @@
-Subproject commit c01ff45312582b2ea896ee307a49165ca4790332
+Subproject commit 6d829e766ff1b1ab867d93631163cbc63ed5798f
diff --git a/lib/pybind11 b/lib/pybind11
index 741d86f2e..3efe9d4cb 160000
--- a/lib/pybind11
+++ b/lib/pybind11
@@ -1 +1 @@
-Subproject commit 741d86f2e3527b667ba85d273a5eea19a0978ef5
+Subproject commit 3efe9d4cb5d7314faee722205e560b8b932aed9e
diff --git a/pyproject.toml b/pyproject.toml
index 55077fa27..5ad3bb598 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -32,17 +32,16 @@ classifiers = [
 ]
 dynamic = ["version"]
 dependencies = [
-    "astropy>=6.1",
-    "astroquery>=0.4.7",
-    "dask[array]>=2024.4.1",  # Needed for astropy library dependency
+    "astropy>=5.1",
+    "astroquery>=0.4.6",
     "jax",
-    "jaxlib",
-    "matplotlib>=3.9",
-    "numpy>=2.0",
-    "pandas>=2.2",  # Needed for scikit_learn
+    "joblib>=1.4",
+    "matplotlib>=3.5",
+    "numpy<2.0",
+    "pandas>=1.5.1",
     "reproject",
-    "scipy>=1.13",
-    "scikit_learn>=1.5.0",
+    "scipy>=1.9.2",
+    "scikit_learn>=1.0.0",
     "koffi>=0.1.1",
     "jplephem",
     "PyYAML>=6.0"
@@ -56,12 +55,15 @@ Changelog = "https://epyc.astro.washington.edu/~kbmod/project_details/release_no
 
 [project.optional-dependencies]
 analysis = [
-    "ephem>=4.1",
+    "tensorflow>=2.9",
+    "matplotlib>=3.6.1",
     "ipywidgets>=8.0",
+    "ephem>=4.1"
 ]
 docs = [
-    "sphinx>=8.0",
-    "sphinx-gallery",
+    "sphinx",
+    # https://github.com/spatialaudio/nbsphinx/issues/655
+    "sphinx-gallery<0.11",
     "sphinx-codeautolink",
     "sphinx-design",
     "numpydoc",

From 7f3dc495a7d9a8bd10a031333b6814c831431558 Mon Sep 17 00:00:00 2001
From: Jeremy Kubica <104161096+jeremykubica@users.noreply.github.com>
Date: Tue, 17 Dec 2024 15:24:59 -0500
Subject: [PATCH 2/2] Fix the mock fits errors

---
 tests/test_results.py    | 1 -
 tests/utils/mock_fits.py | 8 ++++++++
 2 files changed, 8 insertions(+), 1 deletion(-)

diff --git a/tests/test_results.py b/tests/test_results.py
index 21a5babfd..30ba6d44d 100644
--- a/tests/test_results.py
+++ b/tests/test_results.py
@@ -278,7 +278,6 @@ def test_is_empty_value(self):
         self.assertFalse(np.any(nums_is_empty))
 
         pairs_is_empty = table.is_empty_value("pairs")
-        print(pairs_is_empty)
         self.assertTrue(np.array_equal(pairs_is_empty, expected))
 
     def test_filter_by_index(self):
diff --git a/tests/utils/mock_fits.py b/tests/utils/mock_fits.py
index 305ee517f..501640d07 100644
--- a/tests/utils/mock_fits.py
+++ b/tests/utils/mock_fits.py
@@ -161,6 +161,14 @@ def get_fits(self, fits_idx, spoof_data=False):
         warnings.filterwarnings("ignore", category=AstropyUserWarning)
         for hdr_idx, HDUClass in enumerate(self.hdu_types):
             hdr = HDUClass()
+
+            # Remove the cards that know we will reinsert them below and
+            # require a specific order. We rely on the file order.
+            for key in ["GCOUNT", "NAXIS", "NAXIS1", "NAXIS2", "PCOUNT"]:
+                if key in hdr.header:
+                    del hdr.header[key]
+
+            # Insert all the cards from the file.
             for k, v, f in hdu_group.groups[hdr_idx]["keyword", "value", "format"]:
                 hdr.header[k] = self.lexical_cast(v, f)
             hdul.append(hdr)