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Natural Language Entity Extraction and Question Answering Using BERT

In this project we'll extract information from unstructured medical text. In particular:

Extracting disease labels from clinical reports

  • Text matching
  • Evaluating a labeler
  • Negation detection
  • Dependency parsing

Question Answering with BERT

  • Preprocessing text for input
  • Extracting answers from model output

This project is inspired by this work done by Irvin et al.