From 120c3e72a2e97615ed1d435c7d47647ce5a5a222 Mon Sep 17 00:00:00 2001 From: Tobias Rausch Date: Wed, 10 Jan 2024 10:13:16 +0100 Subject: [PATCH] fix typo --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 0296f4b..75de272 100644 --- a/README.md +++ b/README.md @@ -149,7 +149,7 @@ Read-depth profiles can also be segmented at the same time. The segmentation is in VCF format but you can extract a BED-like file using bcftools. -`bcftools query -f "%CHROM\t%POS\t%INFO/END\t%ID\t[%RDCN]\n" cnv.bcf > segmentation.bed` +`bcftools query -f "%CHROM\t%POS\t%INFO/END\t%ID[\t%RDCN]\n" cnv.bcf > segmentation.bed` Plotting: @@ -208,7 +208,7 @@ Somatic copy-number alterations (SCNAs) * Optional: Plot the SCNAs using bcftools and R. -`bcftools query -s tumor -f "%CHROM\t%POS\t%INFO/END\t%ID\t[%RDCN]\n" somatic.bcf > segmentation.bed` +`bcftools query -s tumor -f "%CHROM\t%POS\t%INFO/END\t%ID[\t%RDCN]\n" somatic.bcf > segmentation.bed` `Rscript R/rd.R tumor.cov.gz segmentation.bed`