From e86eb1717d08f987265aa6973ca0d59946e3e3d2 Mon Sep 17 00:00:00 2001
From: marscher <m.scherer@fu-berlin.de>
Date: Tue, 15 Oct 2019 12:00:49 +0200
Subject: [PATCH] [ci/test-reports] publish to agent working dir

---
 devtools/azure-pipelines-osx.yml  |  1 +
 devtools/conda-recipe/meta.yaml   |  5 +----
 devtools/conda-recipe/run_test.py | 15 +++++++--------
 devtools/conda-setup+build.yml    |  2 +-
 devtools/test-results.yml         | 14 ++++++++++++--
 5 files changed, 22 insertions(+), 15 deletions(-)

diff --git a/devtools/azure-pipelines-osx.yml b/devtools/azure-pipelines-osx.yml
index c1c671e59..7c0f1cbb1 100644
--- a/devtools/azure-pipelines-osx.yml
+++ b/devtools/azure-pipelines-osx.yml
@@ -16,6 +16,7 @@ jobs:
 
   - script: sudo chmod -R 777 /usr/local/miniconda
     displayName: Fix Conda permissions
+  - script: env
 
   - template: conda-setup+build.yml
   - template: test-results.yml
diff --git a/devtools/conda-recipe/meta.yaml b/devtools/conda-recipe/meta.yaml
index e691a6ddb..5b0adc5f1 100644
--- a/devtools/conda-recipe/meta.yaml
+++ b/devtools/conda-recipe/meta.yaml
@@ -8,8 +8,8 @@ source:
 
 build:
   script_env:
-   - CIRCLE_TEST_REPORTS
    - OMP_NUM_THREADS
+   - AGENT_BUILDDIRECTORY
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
 
 requirements:
@@ -22,14 +22,11 @@ requirements:
   host:
     - cython
     - intel-openmp # [osx]
-    - mdtraj
     - numpy
     - python
     - scipy
     - setuptools
     - pip
-# we ship this in the repo
-#    - pybind11
 
   run:
     #- bhmm >=0.6.3,<0.7
diff --git a/devtools/conda-recipe/run_test.py b/devtools/conda-recipe/run_test.py
index 3ae34b5d3..13c68fc59 100644
--- a/devtools/conda-recipe/run_test.py
+++ b/devtools/conda-recipe/run_test.py
@@ -2,17 +2,16 @@
 import sys
 
 import pytest
+import tempfile
 
 cover_pkg = 'sktime'
-
+xml_results_dest = os.getenv('SYSTEM_DEFAULTWORKINGDIRECTORY', tempfile.gettempdir())
+assert os.path.isdir(xml_results_dest), 'no dest dir available'
 # where to write junit xml
-junit_xml = os.path.join(os.getenv('CIRCLE_TEST_REPORTS', os.path.expanduser('~')),
-                         'reports', 'junit.xml')
-target_dir = os.path.dirname(junit_xml)
-if not os.path.exists(target_dir):
-    os.makedirs(target_dir)
+junit_xml = os.path.join(xml_results_dest, 'junit.xml')
+cov_xml = os.path.join(xml_results_dest, 'coverage.xml')
 print('junit destination:', junit_xml)
-
+print('coverage dest:', cov_xml)
 pytest_args = ("-vv "
                "--cov={cover_pkg} "
                "--cov-report=xml:{dest_report} "
@@ -22,7 +21,7 @@
                "tests/ "
                .format(cover_pkg=cover_pkg,
                        junit_xml=junit_xml,
-                       dest_report=os.path.join(os.path.expanduser('~/'), 'coverage.xml'),
+                       dest_report=cov_xml,
                        )
                .split(' '))
 
diff --git a/devtools/conda-setup+build.yml b/devtools/conda-setup+build.yml
index 656d8fa9c..f493a82e2 100644
--- a/devtools/conda-setup+build.yml
+++ b/devtools/conda-setup+build.yml
@@ -3,7 +3,7 @@ steps:
       conda config --add channels conda-forge
       conda config --set always_yes true
       conda config --set quiet true
-      conda install conda-build
+      conda install conda-build conda-verify
     displayName: 'Install dependencies'
     continueOnError: false
   - bash: |
diff --git a/devtools/test-results.yml b/devtools/test-results.yml
index b3bed55a4..2b870e2ed 100644
--- a/devtools/test-results.yml
+++ b/devtools/test-results.yml
@@ -3,7 +3,17 @@ steps:
 - task: PublishTestResults@2
   inputs:
     testResultsFormat: 'JUnit' # Options: JUnit, NUnit, VSTest, xUnit, cTest
-    testResultsFiles: '**/junit.xml'
-    searchFolder: '$(HOME)' # Optional
+    testResultsFiles: '**/*junit.xml'
     failTaskOnFailedTests: true # Optional
     publishRunAttachments: true # Optional
+
+- task: PublishCodeCoverageResults@1
+  inputs:
+    codeCoverageTool: 'cobertura' # Options: cobertura, jaCoCo
+    summaryFileLocation: '$(System.DefaultWorkingDirectory)/coverage.xml'
+    pathToSources: '$(Build.SourcesDirectory)/sktime' # Optional
+    #reportDirectory: # Optional
+    #additionalCodeCoverageFiles: # Optional
+    #failIfCoverageEmpty: false # Optional
+
+- bash: curl -s https://codecov.io/bash | bash