From cf2ed57452e85821188a55afe1b299f1e378b0f6 Mon Sep 17 00:00:00 2001 From: chejennifer <69875368+chejennifer@users.noreply.github.com> Date: Tue, 5 Nov 2024 13:18:35 -0800 Subject: [PATCH 01/11] [bio] update multi-hop properties (#4712) - Add multi-hop properties needed for the hero queries - Update multi-hop properties where naming has changed from data cleanup - Update entity overview tile to link to the browser page for ease of testing --- deploy/nl/catalog.yaml | 2 +- server/config/nl_page/prop_titles.json | 24 +++- .../whatisthephylumofvolvox/debug_info.json | 106 ++++++++------- .../debug_info.json | 100 +++++++------- .../debug_info.json | 90 ++++++------ .../compareobesityvs.poverty/debug_info.json | 64 ++++----- .../debug_info.json | 84 ++++++------ .../debug_info.json | 128 +++++++++--------- .../debug_info.json | 54 ++++---- .../chart_config.json | 18 +++ .../components/tiles/entity_overview_tile.tsx | 5 +- tools/nl/embeddings/input/bio/_preindex.csv | 18 ++- tools/nl/embeddings/input/bio/sheets_svs.csv | 12 +- 13 files changed, 380 insertions(+), 325 deletions(-) diff --git a/deploy/nl/catalog.yaml b/deploy/nl/catalog.yaml index de54d5294c..9cb901f293 100644 --- a/deploy/nl/catalog.yaml +++ b/deploy/nl/catalog.yaml @@ -78,7 +78,7 @@ indexes: bio_ft: store_type: MEMORY source_path: ../../tools/nl/embeddings/input/bio - embeddings_path: gs://datcom-nl-models/bio_ft_2024_06_24_23_40_05/embeddings.csv + embeddings_path: gs://datcom-nl-models/bio_ft_2024_11_05_09_59_39/embeddings.csv model: ft-final-v20230717230459-all-MiniLM-L6-v2 healthcheck_query: "Gene" base_uae_lance: diff --git a/server/config/nl_page/prop_titles.json b/server/config/nl_page/prop_titles.json index 4a7e7e3257..3cf8c9cbc0 100644 --- a/server/config/nl_page/prop_titles.json +++ b/server/config/nl_page/prop_titles.json @@ -1,19 +1,35 @@ { - "<-referenceSNPClusterID{typeOf:GeneticVariantGeneAssociation}->geneSymbol": { + "<-variantID{typeOf:GeneGeneticVariantAssociation}->geneID": { "displayName": "associated gene", "titleFormat": "The associated genes for {entity} are" }, - "<-geneSymbol{typeOf:GeneticVariantGeneAssociation}->referenceSNPClusterID": { + "<-geneID{typeOf:GeneGeneticVariantAssociation}->variantID": { "displayName": "associated genetic variant", "titleFormat": "The associated genetic variants for {entity} are" }, - "<-diseaseOntologyID{typeOf:DiseaseGeneAssociation}->geneID": { + "<-diseaseID{typeOf:DiseaseGeneAssociation}->geneID": { "displayName": "associated gene", "titleFormat": "The associated genes for {entity} are" }, - "<-geneID{typeOf:DiseaseGeneAssociation}->diseaseOntologyID": { + "<-geneID{typeOf:DiseaseGeneAssociation}->diseaseID": { "displayName": "associated disease", "titleFormat": "The associated diseases for {entity} are" + }, + "<-diseaseID{typeOf:DiseaseGeneticVariantAssociation}->geneticVariantID": { + "displayName": "associated genetic variant", + "titleFormat": "The associated genetic variants for {entity} are" + }, + "<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID": { + "displayName": "associated disease", + "titleFormat": "The associated diseases for {entity} are" + }, + "<-compoundID{typeOf:ChemicalCompoundGeneticVariantAssociation}->variantID": { + "displayName": "associated genetic variant", + "titleFormat": "The associated genetic variants for {entity} are" + }, + "<-variantID{typeOf:ChemicalCompoundGeneticVariantAssociation}->compoundID": { + "displayName": "associated chemical compound", + "titleFormat": "The associated chemical compounds for {entity} are" }, "->mRNA": { "displayName": "mRNA" diff --git a/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json b/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json index 88264f8460..e434859d40 100644 --- a/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json +++ b/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json @@ -11,28 +11,28 @@ "sv_matching": { "CosineScore": [ 0.35510897636413574, - 0.3460872769355774, + 0.3460870683193207, 0.3452577292919159, - 0.344845712184906, - 0.34113651514053345, - 0.3384983241558075, - 0.3349902033805847, - 0.3316609561443329, - 0.3260059356689453, - 0.32424432039260864, - 0.3206062316894531, + 0.34484589099884033, + 0.3411366045475006, + 0.3384982645511627, + 0.3349902629852295, + 0.3316609263420105, + 0.32600605487823486, + 0.3242444694042206, + 0.32060620188713074, 0.31426557898521423, - 0.3127653896808624, - 0.31262922286987305, - 0.31250447034835815, - 0.31177398562431335, - 0.31033921241760254, - 0.31007489562034607, - 0.30988338589668274, - 0.3080539405345917, - 0.30745869874954224, - 0.30719631910324097, - 0.3039420247077942 + 0.3127654492855072, + 0.3126293420791626, + 0.31250452995300293, + 0.31177404522895813, + 0.3103388845920563, + 0.3100748658180237, + 0.3098835051059723, + 0.3080541491508484, + 0.3074587285518646, + 0.3071962296962738, + 0.30394214391708374 ], "MultiSV": {}, "Query": "what is the phylum of", @@ -64,39 +64,42 @@ }, "props_matching": { "CosineScore": [ - 0.9999998807907104, - 0.4752839505672455, - 0.36154165863990784, - 0.34200993180274963, - 0.3293309211730957, - 0.31845176219940186, - 0.31466981768608093, - 0.3083951473236084, - 0.3079407513141632, - 0.30463001132011414, - 0.28270864486694336, - 0.28187549114227295, - 0.2808278203010559, - 0.2804529666900635, - 0.27429836988449097, - 0.27150505781173706, - 0.2707182466983795, - 0.26954683661460876, - 0.2599008083343506, - 0.2599008083343506, - 0.24827907979488373, - 0.24662044644355774, - 0.24632112681865692, - 0.24616354703903198, - 0.24212250113487244, - 0.23135541379451752, - 0.2296244502067566, - 0.22773587703704834 + 1.0000001192092896, + 0.47528401017189026, + 0.3615417182445526, + 0.34543079137802124, + 0.34543079137802124, + 0.3420097231864929, + 0.3293308615684509, + 0.318451464176178, + 0.31466978788375854, + 0.308395117521286, + 0.30794060230255127, + 0.3046301007270813, + 0.2827085852622986, + 0.281875342130661, + 0.28082770109176636, + 0.2804528772830963, + 0.2742983400821686, + 0.2715050280094147, + 0.27071818709373474, + 0.2695467472076416, + 0.25990068912506104, + 0.25990068912506104, + 0.24827904999256134, + 0.24662022292613983, + 0.24632100760936737, + 0.2461635172367096, + 0.24212227761745453, + 0.23135530948638916, + 0.2296244353055954 ], "PROP": [ "phylum", "chemblID", "geneID", + "<-compoundID{typeOf:ChemicalCompoundGeneticVariantAssociation}->variantID", + "<-variantID{typeOf:ChemicalCompoundGeneticVariantAssociation}->compoundID", "virusGenus", "typeOfGene", "fullName", @@ -112,16 +115,15 @@ "virusHost", "strandOrientation", "ncbiDNASequenceName", - "<-geneSymbol{typeOf:GeneticVariantGeneAssociation}->referenceSNPClusterID", - "<-referenceSNPClusterID{typeOf:GeneticVariantGeneAssociation}->geneSymbol", + "<-geneID{typeOf:GeneGeneticVariantAssociation}->variantID", + "<-variantID{typeOf:GeneGeneticVariantAssociation}->geneID", "ncbiProteinAccessionNumber", "alleleType", "hg38GenomicLocation", "ofVirusSpecies", "hg19GenomicLocation", "ncbiTaxonID", - "antigenType", - "alleleOrigin" + "antigenType" ] }, "query_detection_debug_logs": { diff --git a/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json b/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json index 0d288676b2..4f8acbe246 100644 --- a/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json +++ b/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json @@ -12,30 +12,30 @@ "query_with_places_removed": "what types of genes are and", "sv_matching": { "CosineScore": [ - 0.5237788558006287, - 0.44518929719924927, - 0.4198145568370819, + 0.5237791538238525, + 0.4451894760131836, + 0.4198145866394043, 0.41922125220298767, - 0.4136667251586914, - 0.4096524715423584, - 0.4066111147403717, - 0.40137141942977905, - 0.40101921558380127, + 0.41366666555404663, + 0.4096527099609375, + 0.4066110849380493, + 0.4013715386390686, + 0.4010191559791565, 0.40063756704330444, - 0.3987462520599365, - 0.3983607292175293, - 0.39052334427833557, - 0.3890331983566284, - 0.38846108317375183, + 0.39874646067619324, + 0.39836058020591736, + 0.39052361249923706, + 0.38903331756591797, + 0.3884609639644623, 0.3883824050426483, - 0.3873300850391388, - 0.3864220678806305, - 0.38589635491371155, - 0.385678768157959, - 0.3854341208934784, - 0.38533875346183777, - 0.3818424642086029, - 0.37970471382141113 + 0.3873301148414612, + 0.38642188906669617, + 0.3858962655067444, + 0.3856789469718933, + 0.3854343295097351, + 0.38533878326416016, + 0.38184264302253723, + 0.37970495223999023 ], "MultiSV": {}, "Query": "what types of genes are and", @@ -68,42 +68,49 @@ }, "props_matching": { "CosineScore": [ - 0.9086108803749084, - 0.7445291876792908, - 0.7330227494239807, - 0.7175889611244202, - 0.6834693551063538, + 0.9086110591888428, + 0.7445294260978699, + 0.7330226898193359, + 0.7175887823104858, + 0.6834690570831299, 0.6590196490287781, - 0.6340398192405701, - 0.5988121628761292, - 0.595878541469574, - 0.5850147604942322, - 0.5810789465904236, + 0.6357895731925964, + 0.6340402364730835, + 0.6171568036079407, + 0.5988123416900635, + 0.5958784818649292, + 0.5850145220756531, + 0.5832706689834595, + 0.5810792446136475, + 0.576904296875, 0.5432419776916504, - 0.5399730205535889, + 0.5399729013442993, 0.5320467948913574, - 0.5309585928916931, - 0.5142701268196106, - 0.5125278830528259, - 0.4610598683357239, - 0.4441079795360565, - 0.3982292413711548, - 0.3944430947303772, - 0.3922898471355438, - 0.38480237126350403 + 0.5309585332870483, + 0.5142703056335449, + 0.5125279426574707, + 0.46105992794036865, + 0.4441080689430237, + 0.39822953939437866, + 0.3944427967071533, + 0.39229002594947815 ], "PROP": [ "typeOfGene", "geneticVariantFunctionalCategory", - "<-referenceSNPClusterID{typeOf:GeneticVariantGeneAssociation}->geneSymbol", - "<-geneSymbol{typeOf:GeneticVariantGeneAssociation}->referenceSNPClusterID", + "<-variantID{typeOf:GeneGeneticVariantAssociation}->geneID", + "<-geneID{typeOf:GeneGeneticVariantAssociation}->variantID", "fullName", "geneID", - "<-diseaseOntologyID{typeOf:DiseaseGeneAssociation}->geneID", - "<-geneID{typeOf:DiseaseGeneAssociation}->diseaseOntologyID", + "<-diseaseID{typeOf:DiseaseGeneticVariantAssociation}->geneticVariantID", + "<-diseaseID{typeOf:DiseaseGeneAssociation}->geneID", + "<-compoundID{typeOf:ChemicalCompoundGeneticVariantAssociation}->variantID", + "<-geneID{typeOf:DiseaseGeneAssociation}->diseaseID", "genomicCoordinates", "antigenType", + "<-variantID{typeOf:ChemicalCompoundGeneticVariantAssociation}->compoundID", "alleleType", + "<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID", "hg19GenomicPosition", "hasRNATranscript", "hg19GenomicLocation", @@ -114,8 +121,7 @@ "referenceAlleleNCBI", "observedAllele", "ncbiDNASequenceName", - "alleleOrigin", - "specializationOf" + "alleleOrigin" ] }, "query_detection_debug_logs": { diff --git a/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json index 6911e00711..9c720a8739 100644 --- a/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json @@ -8,43 +8,43 @@ "query_with_places_removed": "compare male population with female population", "sv_matching": { "CosineScore": [ - 0.9187589883804321, - 0.8590542674064636, + 0.9187595844268799, + 0.8590543866157532, 0.8354092836380005, - 0.7823135852813721, - 0.7773193120956421, + 0.7823134660720825, + 0.7773187756538391, 0.7762894630432129, 0.7663271427154541, - 0.7661072611808777, - 0.7614185810089111, - 0.7606043219566345, - 0.7595799565315247, - 0.7573726773262024, - 0.757302463054657, - 0.7572974562644958, - 0.7553005814552307, - 0.753344714641571, - 0.7532935738563538, - 0.7509563565254211, - 0.7482579350471497, - 0.7451451420783997, - 0.7443950176239014, - 0.7431556582450867, - 0.7426689267158508, - 0.7396599650382996, - 0.7371536493301392, - 0.7365996241569519, - 0.7347152829170227, - 0.7336517572402954, - 0.7326081991195679, - 0.7325156927108765, - 0.7302993535995483, - 0.729926347732544, + 0.766107439994812, + 0.7614184617996216, + 0.7606041431427002, + 0.7595797181129456, + 0.7573733329772949, + 0.7573024034500122, + 0.757297158241272, + 0.7553009390830994, + 0.7533451318740845, + 0.7532937526702881, + 0.7509560585021973, + 0.7482578754425049, + 0.7451456785202026, + 0.7443947792053223, + 0.7431552410125732, + 0.7426693439483643, + 0.7396597862243652, + 0.7371534109115601, + 0.7366002798080444, + 0.7347153425216675, + 0.733651876449585, + 0.732607901096344, + 0.7325160503387451, + 0.7302997708320618, + 0.7299268841743469, 0.7289118766784668, - 0.728903591632843, - 0.7280725836753845, - 0.7259583473205566, - 0.7259331345558167 + 0.7289034724235535, + 0.7280722260475159, + 0.7259584665298462, + 0.7259330153465271 ], "MultiSV": { "Candidates": [ @@ -54,7 +54,7 @@ "Parts": [ { "CosineScore": [ - 0.9257851839065552 + 0.9257858991622925 ], "QueryPart": "male population", "SV": [ @@ -63,8 +63,8 @@ }, { "CosineScore": [ - 0.92969810962677, - 0.8847430348396301 + 0.9296979904174805, + 0.884743332862854 ], "QueryPart": "female population", "SV": [ @@ -80,7 +80,7 @@ "Parts": [ { "CosineScore": [ - 0.9117769002914429 + 0.911777138710022 ], "QueryPart": "male population female", "SV": [ @@ -89,8 +89,8 @@ }, { "CosineScore": [ - 0.8982371687889099, - 0.8723466992378235 + 0.8982378840446472, + 0.8723467588424683 ], "QueryPart": "population", "SV": [ @@ -106,10 +106,10 @@ "Parts": [ { "CosineScore": [ - 0.8088874816894531, - 0.8034244179725647, - 0.8017649054527283, - 0.7751561999320984 + 0.808887243270874, + 0.8034241199493408, + 0.8017654418945312, + 0.775155782699585 ], "QueryPart": "male", "SV": [ @@ -121,8 +121,8 @@ }, { "CosineScore": [ - 0.9170326590538025, - 0.8730189204216003 + 0.9170327186584473, + 0.873018741607666 ], "QueryPart": "population female population", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json index 2717973e61..83ff52431b 100644 --- a/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json @@ -8,35 +8,35 @@ "query_with_places_removed": "compare obesity vs poverty", "sv_matching": { "CosineScore": [ - 0.8778440952301025, - 0.7967696785926819, - 0.7624966502189636, - 0.7499464750289917, - 0.7484046220779419, - 0.744289755821228, - 0.7357544302940369, - 0.7350348830223083, - 0.7310351729393005, - 0.7289621829986572, - 0.7266256213188171, - 0.7264258861541748, - 0.7264258861541748, - 0.7253912091255188, + 0.8778442740440369, + 0.7967699766159058, + 0.762496829032898, + 0.7499465942382812, + 0.7484047412872314, + 0.7442895174026489, + 0.7357541918754578, + 0.7350349426269531, + 0.7310354709625244, + 0.7289618253707886, + 0.7266261577606201, + 0.7264261841773987, + 0.7264261841773987, + 0.7253916263580322, 0.7230079174041748, - 0.713947594165802, - 0.7126947641372681, - 0.7094854116439819, - 0.7085545659065247, - 0.7085544466972351, - 0.7078820466995239, - 0.7077706456184387, - 0.7045392394065857, - 0.7024305462837219, - 0.7004537582397461, - 0.6994994878768921, - 0.695670485496521, - 0.6947909593582153, - 0.6913240551948547 + 0.7139475345611572, + 0.7126950621604919, + 0.7094853520393372, + 0.7085550427436829, + 0.7085551023483276, + 0.7078822255134583, + 0.7077707052230835, + 0.7045387029647827, + 0.7024303078651428, + 0.7004534602165222, + 0.6994997262954712, + 0.6956704258918762, + 0.6947906613349915, + 0.6913242936134338 ], "MultiSV": { "Candidates": [ @@ -46,10 +46,10 @@ "Parts": [ { "CosineScore": [ - 0.8467828035354614, - 0.8316561579704285, - 0.8201544284820557, - 0.8177065253257751 + 0.8467836380004883, + 0.8316553831100464, + 0.8201552033424377, + 0.8177061080932617 ], "QueryPart": "obesity", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json index fdb51b9dd8..bef680e6ec 100644 --- a/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json @@ -8,34 +8,34 @@ "query_with_places_removed": "how are factors like obesity , blood pressure and asthma impacted by climate change", "sv_matching": { "CosineScore": [ - 0.7864788770675659, - 0.7135568261146545, - 0.691805899143219, - 0.6740916967391968, - 0.6734588742256165, - 0.670462429523468, - 0.6635114550590515, - 0.6593927145004272, - 0.6520175337791443, - 0.6484816074371338, + 0.7864793539047241, + 0.7135567665100098, + 0.691805362701416, + 0.6740915179252625, + 0.6734591722488403, + 0.6704620718955994, + 0.6635113954544067, + 0.6593924760818481, + 0.6520178318023682, + 0.6484817266464233, 0.6461696624755859, - 0.6459028124809265, - 0.6435540914535522, + 0.6459026336669922, + 0.6435545682907104, 0.6410900354385376, - 0.640523374080658, - 0.6402111649513245, - 0.6384206414222717, - 0.6380341053009033, - 0.6376466751098633, - 0.6346374154090881, - 0.6341455578804016, + 0.6405231952667236, + 0.6402113437652588, + 0.6384210586547852, + 0.6380343437194824, + 0.6376464366912842, + 0.6346377730369568, + 0.6341456174850464, 0.6338476538658142, - 0.632270336151123, - 0.6322208046913147, - 0.6304947137832642, - 0.6302966475486755, - 0.6298351287841797, - 0.6295675039291382 + 0.6322696805000305, + 0.6322205662727356, + 0.6304948925971985, + 0.6302965879440308, + 0.6298357844352722, + 0.6295678019523621 ], "MultiSV": { "Candidates": [ @@ -45,7 +45,7 @@ "Parts": [ { "CosineScore": [ - 0.7997785806655884 + 0.7997788786888123 ], "QueryPart": "factors like obesity blood pressure asthma impacted", "SV": [ @@ -54,7 +54,7 @@ }, { "CosineScore": [ - 1.000000238418579 + 1.0 ], "QueryPart": "climate change", "SV": [ @@ -69,11 +69,11 @@ "Parts": [ { "CosineScore": [ - 0.7588625550270081, - 0.7463639974594116, - 0.740165114402771, - 0.7351229190826416, - 0.7130995392799377 + 0.7588618993759155, + 0.7463642954826355, + 0.740165650844574, + 0.7351235151290894, + 0.7130995988845825 ], "QueryPart": "factors like obesity", "SV": [ @@ -86,7 +86,7 @@ }, { "CosineScore": [ - 1.0000003576278687 + 0.9999995827674866 ], "QueryPart": "blood pressure", "SV": [ @@ -95,8 +95,8 @@ }, { "CosineScore": [ - 0.8255704641342163, - 0.802787184715271 + 0.8255698084831238, + 0.8027870655059814 ], "QueryPart": "asthma impacted climate change", "SV": [ @@ -112,9 +112,9 @@ "Parts": [ { "CosineScore": [ - 0.7768431305885315, - 0.7495043873786926, - 0.7342660427093506, + 0.7768431901931763, + 0.7495046257972717, + 0.7342654466629028, 0.7325114011764526 ], "QueryPart": "factors like obesity blood pressure asthma", @@ -127,7 +127,7 @@ }, { "CosineScore": [ - 0.9056915044784546 + 0.9056921005249023 ], "QueryPart": "impacted climate change", "SV": [ @@ -142,7 +142,7 @@ "Parts": [ { "CosineScore": [ - 0.8207898736000061 + 0.8207905888557434 ], "QueryPart": "factors like obesity blood pressure", "SV": [ @@ -151,8 +151,8 @@ }, { "CosineScore": [ - 0.8255704641342163, - 0.802787184715271 + 0.8255698084831238, + 0.8027870655059814 ], "QueryPart": "asthma impacted climate change", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json index 88431aa490..9732c39707 100644 --- a/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json @@ -8,46 +8,46 @@ "query_with_places_removed": "number of poor hispanic women with phd", "sv_matching": { "CosineScore": [ - 0.7985790967941284, - 0.788325846195221, - 0.7763473391532898, - 0.7740628719329834, - 0.741028904914856, - 0.7334664463996887, - 0.7228288054466248, - 0.7225687503814697, - 0.6995472311973572, - 0.6995018720626831, - 0.6976181268692017, - 0.6974342465400696, - 0.6960033774375916, - 0.6953437924385071, - 0.6945170760154724, - 0.6939643025398254, - 0.693536639213562, - 0.6908403635025024, - 0.690697431564331, - 0.6896734833717346, - 0.6889524459838867, - 0.6886194348335266, - 0.686329185962677, + 0.7985796332359314, + 0.7883262634277344, + 0.776346743106842, + 0.77406245470047, + 0.7410296201705933, + 0.7334667444229126, + 0.7228284478187561, + 0.722568929195404, + 0.6995474100112915, + 0.6995023488998413, + 0.697618305683136, + 0.6974341869354248, + 0.696003794670105, + 0.6953426003456116, + 0.6945168972015381, + 0.6939643621444702, + 0.6935360431671143, + 0.6908406019210815, + 0.6906974911689758, + 0.6896734237670898, + 0.6889521479606628, + 0.6886201500892639, + 0.6863292455673218, 0.6859177947044373, - 0.6827537417411804, - 0.6822136044502258, - 0.6815626621246338, - 0.6798743009567261, - 0.6768563985824585, - 0.6763087511062622, - 0.6751545071601868, - 0.6744989156723022, - 0.6725670695304871, - 0.6717979907989502, - 0.6691677570343018, - 0.6690006852149963, - 0.6682180166244507, - 0.6678112149238586, - 0.665069043636322, - 0.6648703813552856 + 0.6827540397644043, + 0.6822139620780945, + 0.6815624237060547, + 0.67987459897995, + 0.676856517791748, + 0.6763089299201965, + 0.6751540303230286, + 0.6744991540908813, + 0.6725671291351318, + 0.6717973947525024, + 0.6691675186157227, + 0.6690007448196411, + 0.6682180762290955, + 0.6678104400634766, + 0.6650688052177429, + 0.6648702621459961 ], "MultiSV": { "Candidates": [ @@ -57,17 +57,17 @@ "Parts": [ { "CosineScore": [ - 0.831177294254303, - 0.8310007452964783, - 0.8255155086517334, - 0.8195511698722839, - 0.8145607709884644, - 0.8090665936470032, - 0.8086387515068054, - 0.8074401021003723, - 0.8002946972846985, - 0.798579752445221, - 0.7878183722496033 + 0.8311771750450134, + 0.8310011029243469, + 0.8255152702331543, + 0.8195514678955078, + 0.8145602345466614, + 0.8090661764144897, + 0.8086389303207397, + 0.8074402809143066, + 0.8002950549125671, + 0.7985796332359314, + 0.787818193435669 ], "QueryPart": "number of poor hispanic", "SV": [ @@ -86,8 +86,8 @@ }, { "CosineScore": [ - 0.8318256139755249, - 0.8029921650886536 + 0.8318259119987488, + 0.8029923439025879 ], "QueryPart": "women phd", "SV": [ @@ -103,8 +103,8 @@ "Parts": [ { "CosineScore": [ - 0.836671769618988, - 0.7972695827484131 + 0.8366719484329224, + 0.7972691059112549 ], "QueryPart": "number of poor", "SV": [ @@ -114,10 +114,10 @@ }, { "CosineScore": [ - 0.8151502013206482, - 0.7885994911193848, - 0.7775559425354004, - 0.7752048969268799 + 0.8151505589485168, + 0.7885995507240295, + 0.7775554656982422, + 0.7752053141593933 ], "QueryPart": "hispanic women phd", "SV": [ @@ -135,8 +135,8 @@ "Parts": [ { "CosineScore": [ - 0.8495932221412659, - 0.8335015177726746 + 0.8495935201644897, + 0.8335005044937134 ], "QueryPart": "number of poor hispanic women", "SV": [ @@ -146,11 +146,11 @@ }, { "CosineScore": [ - 0.7646967172622681, + 0.7646968960762024, 0.7476688027381897, - 0.7377063632011414, - 0.7362765669822693, - 0.7305881977081299 + 0.7377066612243652, + 0.7362767457962036, + 0.7305882573127747 ], "QueryPart": "phd", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json index faec85fed8..6a9d2ab9e5 100644 --- a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json @@ -8,30 +8,30 @@ "query_with_places_removed": "show me the impact of climate change on drought", "sv_matching": { "CosineScore": [ - 0.8393685817718506, - 0.7931121587753296, - 0.7699977159500122, - 0.7208102941513062, - 0.7175307869911194, + 0.8393681645393372, + 0.79311203956604, + 0.7699974775314331, + 0.7208107709884644, + 0.7175306081771851, 0.6995436549186707, - 0.6863453984260559, - 0.674246072769165, - 0.673050582408905, - 0.6703541874885559, - 0.6652891635894775, - 0.6644605398178101, - 0.6353793740272522, - 0.6349935531616211, - 0.6347004175186157, - 0.6308181285858154, + 0.6863456964492798, + 0.674246609210968, + 0.6730499267578125, + 0.6703540682792664, + 0.6652892827987671, + 0.6644606590270996, + 0.6353792548179626, + 0.6349931359291077, + 0.6347004771232605, + 0.630818247795105, 0.6290862560272217, - 0.6256593465805054, - 0.6180377006530762, - 0.6162121891975403, - 0.6141721606254578, - 0.6139706969261169, - 0.6138609051704407, - 0.6123875379562378 + 0.6256592273712158, + 0.6180376410484314, + 0.6162123084068298, + 0.6141720414161682, + 0.6139707565307617, + 0.6138609647750854, + 0.6123877167701721 ], "MultiSV": { "Candidates": [ @@ -41,7 +41,7 @@ "Parts": [ { "CosineScore": [ - 0.8787480592727661 + 0.8787487149238586 ], "QueryPart": "show climate change", "SV": [ @@ -50,7 +50,7 @@ }, { "CosineScore": [ - 1.000000238418579 + 1.0 ], "QueryPart": "drought", "SV": [ @@ -65,8 +65,8 @@ "Parts": [ { "CosineScore": [ - 0.7942371964454651, - 0.7929015159606934 + 0.7942370176315308, + 0.7929013967514038 ], "QueryPart": "show climate", "SV": [ @@ -76,7 +76,7 @@ }, { "CosineScore": [ - 0.866513192653656 + 0.866512656211853 ], "QueryPart": "change drought", "SV": [ diff --git a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json index a5f832efe9..a1d256de8f 100644 --- a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json +++ b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json @@ -4,6 +4,24 @@ "categories": [ { "blocks": [ + { + "columns": [ + { + "tiles": [ + { + "answerMessageTileSpec": { + "propertyExpr": "<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID" + }, + "entities": [ + "bio/rs7903146" + ], + "title": "The associated diseases for rs7903146 are", + "type": "ANSWER_MESSAGE" + } + ] + } + ] + }, { "columns": [ { diff --git a/static/js/components/tiles/entity_overview_tile.tsx b/static/js/components/tiles/entity_overview_tile.tsx index 19dcac9e88..09fe9320db 100644 --- a/static/js/components/tiles/entity_overview_tile.tsx +++ b/static/js/components/tiles/entity_overview_tile.tsx @@ -20,6 +20,8 @@ import React from "react"; +import { URI_PREFIX } from "../../browser/constants"; + interface EntityOverviewTilePropType { entity: string; } @@ -34,7 +36,8 @@ export function EntityOverviewTile( return ( <>
- Entity overview tile for {props.entity} + Entity overview tile for  + {props.entity}
); diff --git a/tools/nl/embeddings/input/bio/_preindex.csv b/tools/nl/embeddings/input/bio/_preindex.csv index 909c5a0988..0dde4b2383 100644 --- a/tools/nl/embeddings/input/bio/_preindex.csv +++ b/tools/nl/embeddings/input/bio/_preindex.csv @@ -6,13 +6,17 @@ A unique ID for a Medical Subject Heading supplementary record,medicalSubjectHea An ID for a Medical Subject Heading descriptor record,medicalSubjectHeadingDescriptorID An ID for a Medical Subject Heading supplementary record,medicalSubjectHeadingSupplementaryRecordID ChEMBL identifier,chemblID -Disease associated with a gene,<-geneID{typeOf:DiseaseGeneAssociation}->diseaseOntologyID -DiseaseGeneAssociation,<-diseaseOntologyID{typeOf:DiseaseGeneAssociation}->geneID;<-geneID{typeOf:DiseaseGeneAssociation}->diseaseOntologyID +ChemicalCompoundGeneticVariantAssociation,<-compoundID{typeOf:ChemicalCompoundGeneticVariantAssociation}->variantID;<-variantID{typeOf:ChemicalCompoundGeneticVariantAssociation}->compoundID +Disease associated with a gene,<-geneID{typeOf:DiseaseGeneAssociation}->diseaseID +Disease associated with a genetic variant,<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID +DiseaseGeneAssociation,<-diseaseID{typeOf:DiseaseGeneAssociation}->geneID;<-geneID{typeOf:DiseaseGeneAssociation}->diseaseID +DiseaseGeneticVariantAssociation,<-diseaseID{typeOf:DiseaseGeneticVariantAssociation}->geneticVariantID;<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID Ensembl ID,ensemblID Functional category of the genetic variant,geneticVariantFunctionalCategory -Gene associated with a disease,<-diseaseOntologyID{typeOf:DiseaseGeneAssociation}->geneID -Gene associated with a genetic variant,<-referenceSNPClusterID{typeOf:GeneticVariantGeneAssociation}->geneSymbol -GeneticVariantGeneAssociation,<-geneSymbol{typeOf:GeneticVariantGeneAssociation}->referenceSNPClusterID;<-referenceSNPClusterID{typeOf:GeneticVariantGeneAssociation}->geneSymbol +Gene associated with a disease,<-diseaseID{typeOf:DiseaseGeneAssociation}->geneID +Gene associated with a genetic variant,<-variantID{typeOf:GeneGeneticVariantAssociation}->geneID +Genetic variant associated with a disease,<-diseaseID{typeOf:DiseaseGeneticVariantAssociation}->geneticVariantID +GeneticVariantGeneAssociation,<-geneID{typeOf:GeneGeneticVariantAssociation}->variantID;<-variantID{typeOf:GeneGeneticVariantAssociation}->geneID MeSH descriptor record ID,medicalSubjectHeadingDescriptorID MeSH supplementary record ID,medicalSubjectHeadingSupplementaryRecordID NCBI Taxonomy database identifier,ncbiTaxonID @@ -51,6 +55,7 @@ antibodyType,antibodyType antigenType,antigenType availableStrength,availableStrength chemblID,chemblID +chemical compound associated with a genetic variant,<-variantID{typeOf:ChemicalCompoundGeneticVariantAssociation}->compoundID chromosomeSize,chromosomeSize class,class "component that provides pharmacological activity or other direct effect in the diagnosis, cure, mitigation, treatment, or prevention of disease, or to affect the structure or any function of the body of man or animals",activeIngredient @@ -62,7 +67,8 @@ full name of the gene,fullName fullName,fullName gene id,geneID geneID,geneID -genetic variant associated with a gene,<-geneSymbol{typeOf:GeneticVariantGeneAssociation}->referenceSNPClusterID +genetic variant associated with a chemical compound,<-compoundID{typeOf:ChemicalCompoundGeneticVariantAssociation}->variantID +genetic variant associated with a gene,<-geneID{typeOf:GeneGeneticVariantAssociation}->variantID geneticVariantFunctionalCategory,geneticVariantFunctionalCategory genomic coordinates,genomicCoordinates genomicCoordinates,genomicCoordinates diff --git a/tools/nl/embeddings/input/bio/sheets_svs.csv b/tools/nl/embeddings/input/bio/sheets_svs.csv index 3d7d78e87c..7042de0db2 100644 --- a/tools/nl/embeddings/input/bio/sheets_svs.csv +++ b/tools/nl/embeddings/input/bio/sheets_svs.csv @@ -41,8 +41,12 @@ ncbiDNASequenceName,ncbiDNASequenceName;NCBI defined segment of DNA sequence nam imageUrl,imageUrl;url to an image of what the biological specimen looks like;what the entity looks like genomicCoordinates,genomicCoordinates;genomic coordinates availableStrength,availableStrength;dose approved for a drug -<-referenceSNPClusterID{typeOf:GeneticVariantGeneAssociation}->geneSymbol,GeneticVariantGeneAssociation;Gene associated with a genetic variant -<-geneSymbol{typeOf:GeneticVariantGeneAssociation}->referenceSNPClusterID,GeneticVariantGeneAssociation;genetic variant associated with a gene -<-diseaseOntologyID{typeOf:DiseaseGeneAssociation}->geneID,DiseaseGeneAssociation;Gene associated with a disease -<-geneID{typeOf:DiseaseGeneAssociation}->diseaseOntologyID,DiseaseGeneAssociation;Disease associated with a gene +<-variantID{typeOf:GeneGeneticVariantAssociation}->geneID,GeneticVariantGeneAssociation;Gene associated with a genetic variant +<-geneID{typeOf:GeneGeneticVariantAssociation}->variantID,GeneticVariantGeneAssociation;genetic variant associated with a gene +<-diseaseID{typeOf:DiseaseGeneAssociation}->geneID,DiseaseGeneAssociation;Gene associated with a disease +<-geneID{typeOf:DiseaseGeneAssociation}->diseaseID,DiseaseGeneAssociation;Disease associated with a gene +<-diseaseID{typeOf:DiseaseGeneticVariantAssociation}->geneticVariantID,DiseaseGeneticVariantAssociation;Genetic variant associated with a disease +<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID,DiseaseGeneticVariantAssociation;Disease associated with a genetic variant +<-compoundID{typeOf:ChemicalCompoundGeneticVariantAssociation}->variantID,ChemicalCompoundGeneticVariantAssociation;genetic variant associated with a chemical compound +<-variantID{typeOf:ChemicalCompoundGeneticVariantAssociation}->compoundID,ChemicalCompoundGeneticVariantAssociation;chemical compound associated with a genetic variant virusGenus,virusGenus;genus of a virus species From 725a1fd98d873bd2a4285e44a36ffc929321953d Mon Sep 17 00:00:00 2001 From: Hannah Pho Date: Wed, 6 Nov 2024 11:28:30 -0500 Subject: [PATCH 02/11] Add wait for loading before SV group click in timeline test (#4714) Hopefully this will resolve custom DC autopush test failures. --- server/webdriver/shared_tests/timeline_test.py | 1 + 1 file changed, 1 insertion(+) diff --git a/server/webdriver/shared_tests/timeline_test.py b/server/webdriver/shared_tests/timeline_test.py index 158320ef82..ec88d6e623 100644 --- a/server/webdriver/shared_tests/timeline_test.py +++ b/server/webdriver/shared_tests/timeline_test.py @@ -127,6 +127,7 @@ def test_check_statvar_and_uncheck(self): self.assertEqual(len(charts), 0) # Expand the Demographics section of the stat var hierarchy. + shared.wait_for_loading(self.driver) shared.click_sv_group(self.driver, "Demographics") # Wait until stat vars are present and click on Population. From 0ed78f2f2c2cb854677f2c4b289b1231cea77813 Mon Sep 17 00:00:00 2001 From: Hannah Pho Date: Wed, 6 Nov 2024 18:37:47 -0500 Subject: [PATCH 03/11] Webdriver test fixes and improvements (#4719) - Remove some landing page example links that don't work anymore - Add parallelization for Custom DC autopush tests - Add some waiting for elements to be ready in tests that were failing on Cloud Build --- run_cdc_tests.sh | 2 +- server/templates/tools/map_examples.json | 25 +------------------ .../tools/visualization_examples.json | 12 +-------- server/webdriver/shared_tests/vis_map_test.py | 14 ++++++++++- 4 files changed, 16 insertions(+), 37 deletions(-) diff --git a/run_cdc_tests.sh b/run_cdc_tests.sh index b19deee39c..22bf9c83be 100755 --- a/run_cdc_tests.sh +++ b/run_cdc_tests.sh @@ -20,4 +20,4 @@ set -e source .env/bin/activate export FLASK_ENV=webdriver -python3 -m pytest --reruns 2 server/webdriver/cdc_tests/ +python3 -m pytest -n 5 --reruns 2 server/webdriver/cdc_tests/ diff --git a/server/templates/tools/map_examples.json b/server/templates/tools/map_examples.json index 84ac3de6c6..615aab681d 100644 --- a/server/templates/tools/map_examples.json +++ b/server/templates/tools/map_examples.json @@ -9,16 +9,6 @@ "text": "districts in India", "url": "#%26sv%3DDifferenceRelativeToBaseDate2006_Max_Temperature_RCP45%26pc%3D0%26pd%3Dcountry%2FIND%26ept%3DAdministrativeArea2" }] - }, { - "header": "Annual Non-Biogenic Carbon Dioxide Emissions", - "preposition": "across", - "examples": [{ - "text": "states in USA", - "url": "#%26sv%3DAnnual_Emissions_CarbonDioxide_NonBiogenic%26pc%3D0%26pd%3Dcountry%2FUSA%26ept%3DState%26ppt%3DEpaReportingFacility" - }, { - "text": "facilities in Texas", - "url": "#%26sv%3DAnnual_Emissions_CarbonDioxide_NonBiogenic%26pc%3D0%26pd%3DgeoId%2F48%26ept%3DCounty%26ppt%3DEpaReportingFacility%26mp%3D1" - }] }, { "header": "Water Withdrawal Rate", "preposition": "across counties in", @@ -106,18 +96,5 @@ "text": "Median Income", "url": "#&sv=Median_Income_Person&pc=0&pd=country/USA&ept=State" }] - }, { - "header": "Greenhouse Gas Emissions", - "preposition": "across", - "examples": [{ - "text": "states in USA", - "url": "#&sv=Annual_Emissions_GreenhouseGas_NonBiogenic&pc=0&pd=country/USA&ept=State&ppt=EpaReportingFacility&mp=1" - }, { - "text": "counties in California", - "url": "#&sv=Annual_Emissions_GreenhouseGas_NonBiogenic&pc=0&pd=geoId/06&ept=County&ppt=EpaReportingFacility&mp=1" - }, { - "text": "Kern County", - "url": "#&sv=Annual_Emissions_GreenhouseGas_NonBiogenic&pc=0&pd=geoId/06029&ept=County&ppt=EpaReportingFacility&mp=1" - }] } -]} \ No newline at end of file +]} diff --git a/server/templates/tools/visualization_examples.json b/server/templates/tools/visualization_examples.json index 1bc482368f..8fe3993c9e 100644 --- a/server/templates/tools/visualization_examples.json +++ b/server/templates/tools/visualization_examples.json @@ -10,16 +10,6 @@ "text": "districts in India", "url": "/tools/visualization?#visType%3Dmap%26place%3Dcountry%2FIND%26placeType%3DAdministrativeArea2%26sv%3D%7B\"dcid\"%3A\"DifferenceRelativeToBaseDate2006_Max_Temperature_RCP45\"%7D" }] - }, { - "header": "Greenhouse Gas Emissions", - "preposition": "across", - "examples": [{ - "text": "states in USA", - "url": "/tools/visualization?#visType%3Dmap%26place%3Dcountry%2FUSA%26placeType%3DState%26sv%3D%7B\"dcid\"%3A\"Annual_Emissions_GreenhouseGas_NonBiogenic\"%7D" - }, { - "text": "counties in California", - "url": "/tools/visualization?#visType%3Dmap%26place%3DgeoId/06%26placeType%3DCounty%26sv%3D%7B\"dcid\"%3A\"Annual_Emissions_GreenhouseGas_NonBiogenic\"%7D" - }] }, { "header": "Median Age", "preposition": "across counties in", @@ -196,4 +186,4 @@ }] } ] -} \ No newline at end of file +} diff --git a/server/webdriver/shared_tests/vis_map_test.py b/server/webdriver/shared_tests/vis_map_test.py index cfb82fac55..885f7bc145 100644 --- a/server/webdriver/shared_tests/vis_map_test.py +++ b/server/webdriver/shared_tests/vis_map_test.py @@ -85,11 +85,17 @@ def test_charts_from_url(self): self.assertEqual(len(map_regions), 58) # Assert rankings are correct. + elements_present = EC.presence_of_all_elements_located( + (By.CSS_SELECTOR, '.ranking-header-section h4')) + WebDriverWait(self.driver, self.TIMEOUT_SEC).until(elements_present) ranking_titles = self.driver.find_elements(By.CSS_SELECTOR, '.ranking-header-section h4') self.assertEqual(len(ranking_titles), 2) self.assertEqual(ranking_titles[0].text, 'Top Places') self.assertEqual(ranking_titles[1].text, 'Bottom Places') + elements_present = EC.presence_of_all_elements_located( + (By.CSS_SELECTOR, '.ranking-list .place-name')) + WebDriverWait(self.driver, self.TIMEOUT_SEC).until(elements_present) ranking_items = self.driver.find_elements(By.CSS_SELECTOR, '.ranking-list .place-name') self.assertEqual(len(ranking_items), 10) @@ -215,11 +221,17 @@ def test_manually_enter_options(self): self.assertEqual(len(map_regions), 58) # Assert rankings are correct. + elements_present = EC.presence_of_all_elements_located( + (By.CSS_SELECTOR, '.ranking-header-section h4')) + WebDriverWait(self.driver, self.TIMEOUT_SEC).until(elements_present) ranking_titles = self.driver.find_elements(By.CSS_SELECTOR, '.ranking-header-section h4') self.assertEqual(len(ranking_titles), 2) self.assertEqual(ranking_titles[0].text, 'Top Places') self.assertEqual(ranking_titles[1].text, 'Bottom Places') + elements_present = EC.presence_of_all_elements_located( + (By.CSS_SELECTOR, '.ranking-list .place-name')) + WebDriverWait(self.driver, self.TIMEOUT_SEC).until(elements_present) ranking_items = self.driver.find_elements(By.CSS_SELECTOR, '.ranking-list .place-name') self.assertEqual(len(ranking_items), 10) @@ -243,4 +255,4 @@ def test_landing_page_link(self): WebDriverWait(self.driver, self.TIMEOUT_SEC).until(element_present) chart_map = self.driver.find_element(By.ID, 'map-items') map_regions = chart_map.find_elements(By.TAG_NAME, 'path') - self.assertGreater(len(map_regions), 1) \ No newline at end of file + self.assertGreater(len(map_regions), 1) From 81c43b67a9277e9821ce7e9ad8985c38bcd1b15c Mon Sep 17 00:00:00 2001 From: chejennifer <69875368+chejennifer@users.noreply.github.com> Date: Thu, 7 Nov 2024 00:35:57 +0000 Subject: [PATCH 04/11] [bio] some fulfillment improvements (#4715) - when multiple entities are recognized but only some entities have data for the property, should only show the entities with data (e.g., [autopush](https://screenshot.googleplex.com/48VaUAxjZtXYMgC) vs [local](https://screenshot.googleplex.com/Brsnuj4DSNmpJSN)) - fix bug in deciding when to show low confidence message. Previously did not consider property score --- .../debug_info.json | 10 +++---- .../debug_info.json | 4 +-- .../chart_config.json | 4 ++- .../chart_config.json | 30 ++++++++++++------- server/lib/nl/common/commentary.py | 22 ++++++++++---- server/lib/nl/detection/utils.py | 10 +++++++ server/lib/nl/fulfillment/triple.py | 30 ++++++++++++++----- 7 files changed, 79 insertions(+), 31 deletions(-) diff --git a/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json index 9c720a8739..5a672b4906 100644 --- a/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json @@ -54,7 +54,7 @@ "Parts": [ { "CosineScore": [ - 0.9257858991622925 + 0.9257855415344238 ], "QueryPart": "male population", "SV": [ @@ -64,7 +64,7 @@ { "CosineScore": [ 0.9296979904174805, - 0.884743332862854 + 0.8847434520721436 ], "QueryPart": "female population", "SV": [ @@ -80,7 +80,7 @@ "Parts": [ { "CosineScore": [ - 0.911777138710022 + 0.9117770195007324 ], "QueryPart": "male population female", "SV": [ @@ -89,8 +89,8 @@ }, { "CosineScore": [ - 0.8982378840446472, - 0.8723467588424683 + 0.8982378244400024, + 0.8723466396331787 ], "QueryPart": "population", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json index 6a9d2ab9e5..1b3a9e23bc 100644 --- a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json @@ -50,7 +50,7 @@ }, { "CosineScore": [ - 1.0 + 0.9999998807907104 ], "QueryPart": "drought", "SV": [ @@ -65,7 +65,7 @@ "Parts": [ { "CosineScore": [ - 0.7942370176315308, + 0.794236958026886, 0.7929013967514038 ], "QueryPart": "show climate", diff --git a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json index a1d256de8f..03140d5885 100644 --- a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json +++ b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json @@ -65,5 +65,7 @@ "peerTopics": [] }, "svSource": "UNKNOWN", - "userMessages": [] + "userMessages": [ + "Low confidence in understanding your query. Displaying the closest results." + ] } \ No newline at end of file diff --git a/server/integration_tests/test_data/e2e_triple/whatisbetacoronavirus1thespeciesof/chart_config.json b/server/integration_tests/test_data/e2e_triple/whatisbetacoronavirus1thespeciesof/chart_config.json index 13964519e6..1954a7a254 100644 --- a/server/integration_tests/test_data/e2e_triple/whatisbetacoronavirus1thespeciesof/chart_config.json +++ b/server/integration_tests/test_data/e2e_triple/whatisbetacoronavirus1thespeciesof/chart_config.json @@ -9,20 +9,28 @@ { "tiles": [ { - "answerTableTileSpec": { - "columns": [ - { - "header": "Virus Host", - "propertyExpr": "->virusHost" - } - ] + "answerMessageTileSpec": { + "propertyExpr": "->virusHost" }, "entities": [ - "bio/Betacoronavirus1", - "bio/D000073641" + "bio/Betacoronavirus1" ], - "title": "The Virus Host for Betacoronavirus 1 are as follows:", - "type": "ANSWER_TABLE" + "title": "The Virus Host for Betacoronavirus 1 is:", + "type": "ANSWER_MESSAGE" + } + ] + } + ] + }, + { + "columns": [ + { + "tiles": [ + { + "entities": [ + "bio/Betacoronavirus1" + ], + "type": "ENTITY_OVERVIEW" } ] } diff --git a/server/lib/nl/common/commentary.py b/server/lib/nl/common/commentary.py index 527c6f59f0..c99d15a4b3 100644 --- a/server/lib/nl/common/commentary.py +++ b/server/lib/nl/common/commentary.py @@ -19,6 +19,7 @@ from server.lib.nl.common.utterance import FulfillmentResult from server.lib.nl.common.utterance import Utterance from server.lib.nl.detection.utils import compute_final_threshold +from server.lib.nl.detection.utils import get_top_prop_score from server.lib.nl.detection.utils import get_top_sv_score from server.lib.nl.explore import params from shared.lib.constants import SV_SCORE_HIGH_CONFIDENCE_THRESHOLD @@ -166,11 +167,22 @@ def user_message(uttr: Utterance) -> UserMessage: uttr.detection.svs_detected.model_threshold, SV_SCORE_HIGH_CONFIDENCE_THRESHOLD) - if (uttr.rankedCharts and - (uttr.sv_source == FulfillmentResult.CURRENT_QUERY or - uttr.sv_source == FulfillmentResult.PARTIAL_PAST_QUERY) and - get_top_sv_score(uttr.detection, uttr.rankedCharts[0]) - < low_confidence_score_report_threshold): + # Get top variable score either from the detected props or svs depending on + # what is being shown in the first chart + top_variable_score = None + if uttr.rankedCharts: + if uttr.rankedCharts[0].svs and ( + uttr.sv_source == FulfillmentResult.CURRENT_QUERY or + uttr.sv_source == FulfillmentResult.PARTIAL_PAST_QUERY): + top_variable_score = get_top_sv_score(uttr.detection, + uttr.rankedCharts[0]) + elif uttr.rankedCharts[ + 0].props and uttr.properties_source == FulfillmentResult.CURRENT_QUERY: + top_variable_score = get_top_prop_score(uttr.detection, + uttr.rankedCharts[0]) + + if (top_variable_score and + (top_variable_score < low_confidence_score_report_threshold)): # We're showing charts for SVs in the current user query and the # top-score is below the threshold, so report message. msg_list.append(LOW_CONFIDENCE_SCORE_MESSAGE) diff --git a/server/lib/nl/detection/utils.py b/server/lib/nl/detection/utils.py index c76bb98cf7..ffcd8a2cc6 100644 --- a/server/lib/nl/detection/utils.py +++ b/server/lib/nl/detection/utils.py @@ -102,6 +102,16 @@ def get_multi_sv_pair( return parts +# Gets the prop score of the prop used in the chart spec +def get_top_prop_score(detection: Detection, cspec: ChartSpec) -> float: + if cspec.props and detection.svs_detected.prop: + prop_set = set(cspec.props) + for idx, prop in enumerate(detection.svs_detected.prop.svs): + if prop in prop_set: + return detection.svs_detected.prop.scores[idx] + return 0 + + # Gets the SV score of the first chart in chart_specs def get_top_sv_score(detection: Detection, cspec: ChartSpec) -> float: # Note that we look for the detected SVs in the `orig_sv_map` field diff --git a/server/lib/nl/fulfillment/triple.py b/server/lib/nl/fulfillment/triple.py index 411223e601..93c5d21af2 100644 --- a/server/lib/nl/fulfillment/triple.py +++ b/server/lib/nl/fulfillment/triple.py @@ -107,15 +107,18 @@ def _populate_prop_expression(state: PopulateState, entity_dcids = [e.dcid for e in state.uttr.entities] prop_values = get_property_value_from_expression(entity_dcids, prop_expression) - if not any(prop_values.values()): + entities_with_value = [ + e for e in state.uttr.entities if prop_values.get(e.dcid, []) + ] + if not entities_with_value: state.uttr.counters.err('triple_property_failed_existence', prop_expression) return False - title = _get_title(state.uttr.entities, prop_expression) + title = _get_title(entities_with_value, prop_expression) cv = ChartVars(props=[prop_expression], title=title) return add_chart_to_utterance(ChartType.ANSWER, state, cv, [], - entities=state.uttr.entities) + entities=entities_with_value) # The overview chart when there is more than 1 entity should be a table with @@ -153,14 +156,27 @@ def populate(state: PopulateState) -> bool: # prop, return. # TODO: revisit how we want to handle multiple props break - # If there is a single entity, always add an entity overview chart - if len(state.uttr.entities) == 1: + + # Get the entities to show in the overview tile. This should be the entities + # from previous charts that have been added, or if no charts were added, then + # it is the detected entities + chart_entities = set() + for cspec in state.uttr.chartCandidates: + chart_entities.update(e.dcid for e in cspec.entities) + overview_entities = state.uttr.entities + if chart_entities: + overview_entities = [ + e for e in overview_entities if e.dcid in chart_entities + ] + + # If there is a single entity to show overview for, add an entity overview chart + if len(overview_entities) == 1: chart_title = _OVERVIEW_TITLE.format( - entity=_get_entity_string(state.uttr.entities)) + entity=_get_entity_string(overview_entities)) chart_added |= add_chart_to_utterance(ChartType.ENTITY_OVERVIEW, state, ChartVars(title=chart_title), [], - entities=state.uttr.entities) + entities=overview_entities) elif not chart_added: # If there is more than 1 entity and no charts added yet, add an overview chart_added = _add_multi_entity_overview(state) From 82d3c9c3ef603390420e19ad92a0780b074c1cec Mon Sep 17 00:00:00 2001 From: Gabriel Mechali Date: Thu, 7 Nov 2024 10:42:49 -0500 Subject: [PATCH 05/11] Replaces accents and more into ascii equivalents for matching algorithm. (#4716) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Places like Curaçao, España, or Algérie were being unfairly demoted in scoring due to the non-ascii character. This PR replaces all special characters before determine the match score. Screencast with the fix: https://screencast.googleplex.com/cast/NDkzOTc5NTE5MjA4NjUyOHw1N2FlYTVmMC00Zg --- server/routes/shared_api/autocomplete/helpers.py | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/server/routes/shared_api/autocomplete/helpers.py b/server/routes/shared_api/autocomplete/helpers.py index 53a667f0c9..4a87ff5372 100644 --- a/server/routes/shared_api/autocomplete/helpers.py +++ b/server/routes/shared_api/autocomplete/helpers.py @@ -16,6 +16,7 @@ import logging import re from typing import Dict, List +import unicodedata from urllib.parse import urlencode from flask import current_app @@ -135,11 +136,21 @@ def off_by_one_letter(str1_word: str, name_word: str) -> bool: return offby <= 1 +def sanitize_and_replace_non_ascii(string: str) -> str: + """Sanitize and replace non ascii. + Returns: + String sanitized and without accents, cedillas, or enye.""" + nfkd_form = unicodedata.normalize('NFKD', string) + return "".join([c for c in nfkd_form if not unicodedata.combining(c)]) + + def get_match_score(match_string: str, name: str) -> float: """Computes a 'score' based on the matching words in two strings. Lowest score is best match. Returns: Float score.""" + name = sanitize_and_replace_non_ascii(name) + match_string = sanitize_and_replace_non_ascii(match_string) rgx = re.compile(r'[\s|,]+') words_in_name = re.split(rgx, name) From ddd3e22b1532cabb154bd132ebc1beb721cd7cdc Mon Sep 17 00:00:00 2001 From: Hannah Pho Date: Thu, 7 Nov 2024 13:21:52 -0500 Subject: [PATCH 06/11] Replace CO2 emissions example links (#4720) --- server/templates/tools/map_examples.json | 7 +++++++ server/templates/tools/visualization_examples.json | 7 +++++++ 2 files changed, 14 insertions(+) diff --git a/server/templates/tools/map_examples.json b/server/templates/tools/map_examples.json index 615aab681d..2920167cf0 100644 --- a/server/templates/tools/map_examples.json +++ b/server/templates/tools/map_examples.json @@ -9,6 +9,13 @@ "text": "districts in India", "url": "#%26sv%3DDifferenceRelativeToBaseDate2006_Max_Temperature_RCP45%26pc%3D0%26pd%3Dcountry%2FIND%26ept%3DAdministrativeArea2" }] + }, { + "header": "Carbon Dioxide Emissions", + "preposition": "across", + "examples": [{ + "text": "countries", + "url": "#%26sv%3DworldBank%2FEN_ATM_CO2E_PC%26pc%3D0%26denom%3DCount_Person%26pd%3DEarth%26ept%3DCountry" + }] }, { "header": "Water Withdrawal Rate", "preposition": "across counties in", diff --git a/server/templates/tools/visualization_examples.json b/server/templates/tools/visualization_examples.json index 8fe3993c9e..476671e42d 100644 --- a/server/templates/tools/visualization_examples.json +++ b/server/templates/tools/visualization_examples.json @@ -10,6 +10,13 @@ "text": "districts in India", "url": "/tools/visualization?#visType%3Dmap%26place%3Dcountry%2FIND%26placeType%3DAdministrativeArea2%26sv%3D%7B\"dcid\"%3A\"DifferenceRelativeToBaseDate2006_Max_Temperature_RCP45\"%7D" }] + }, { + "header": "Carbon Dioxide Emissions", + "preposition": "across", + "examples": [{ + "text": "countries", + "url": "/tools/visualization?#visType%3Dmap%26place%3DEarth%26placeType%3DCountry%26sv%3D%7B\"dcid\"%3A\"worldBank%2FEN_ATM_CO2E_PC\"%7D" + }] }, { "header": "Median Age", "preposition": "across counties in", From 9d1d4e061d44d443a6f7a616ead01ab5cbf73b30 Mon Sep 17 00:00:00 2001 From: Christie Ellks Date: Thu, 7 Nov 2024 11:04:16 -0800 Subject: [PATCH 07/11] Truncate golden CosineScores to 6 decimals to reduce noisy diffs. (#4718) Reduces CosineScores to 6 decimals to reduce the diffs that are generated when updating the integration_test goldens. This is to reduce noise in reviews and should not fundamentally affect the actual tests. --- server/integration_tests/explore_test.py | 19 ++- .../whatisthephylumofvolvox/debug_info.json | 104 +++++++------- .../debug_info.json | 100 ++++++------- .../debug_info.json | 98 ++++++------- .../compareobesityvs.poverty/debug_info.json | 66 ++++----- .../debug_info.json | 90 ++++++------ .../debug_info.json | 132 +++++++++--------- .../debug_info.json | 58 ++++---- 8 files changed, 341 insertions(+), 326 deletions(-) diff --git a/server/integration_tests/explore_test.py b/server/integration_tests/explore_test.py index e294354497..12749f1b71 100644 --- a/server/integration_tests/explore_test.py +++ b/server/integration_tests/explore_test.py @@ -119,13 +119,23 @@ def handle_response(self, # TODO: Proper fix should be to make NL server more deterministic if 'variables' in resp: resp_var_to_score = {} + dbg['sv_matching']['CosineScore'] = _format_scores( + dbg['sv_matching']['CosineScore']) for i, sv in enumerate(dbg['sv_matching']['SV']): - score = dbg['sv_matching']['CosineScore'][i] - resp_var_to_score[sv] = float("{:.6f}".format(score)) + resp_var_to_score[sv] = dbg['sv_matching']['CosineScore'][i] sorted_variables = sorted(resp['variables'], key=lambda x: (-resp_var_to_score.get(x, 0), x)) resp['variables'] = sorted_variables + # Truncate CosineScores to 6 decimals to reduce noisy diffs. + for candidate in dbg['sv_matching']['MultiSV'].get('Candidates', []): + for part in candidate.get('Parts', []): + if multisv_scores := part.get('CosineScore', []): + part['CosineScore'] = _format_scores(multisv_scores) + + if props_scores := dbg['props_matching'].get('CosineScore', []): + dbg['props_matching']['CosineScore'] = _format_scores(props_scores) + resp['debug'] = {} resp['context'] = {} for category in resp.get('config', {}).get('categories', []): @@ -793,3 +803,8 @@ def _del_field(d: dict, path: str): del tmp[p] else: tmp = tmp[p] + + +# Helper function to consistently format float scores. +def _format_scores(scores): + return [float("{:.6f}".format(score)) for score in scores] diff --git a/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json b/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json index e434859d40..3874180d73 100644 --- a/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json +++ b/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json @@ -10,29 +10,29 @@ "query_with_places_removed": "what is the phylum of", "sv_matching": { "CosineScore": [ - 0.35510897636413574, - 0.3460870683193207, - 0.3452577292919159, - 0.34484589099884033, - 0.3411366045475006, - 0.3384982645511627, - 0.3349902629852295, - 0.3316609263420105, - 0.32600605487823486, - 0.3242444694042206, - 0.32060620188713074, - 0.31426557898521423, - 0.3127654492855072, - 0.3126293420791626, - 0.31250452995300293, - 0.31177404522895813, - 0.3103388845920563, - 0.3100748658180237, - 0.3098835051059723, - 0.3080541491508484, - 0.3074587285518646, - 0.3071962296962738, - 0.30394214391708374 + 0.355109, + 0.346087, + 0.345258, + 0.344846, + 0.341137, + 0.338498, + 0.33499, + 0.331661, + 0.326006, + 0.324244, + 0.320606, + 0.314266, + 0.312765, + 0.312629, + 0.312505, + 0.311774, + 0.310339, + 0.310075, + 0.309883, + 0.308054, + 0.307459, + 0.307196, + 0.303942 ], "MultiSV": {}, "Query": "what is the phylum of", @@ -64,35 +64,35 @@ }, "props_matching": { "CosineScore": [ - 1.0000001192092896, - 0.47528401017189026, - 0.3615417182445526, - 0.34543079137802124, - 0.34543079137802124, - 0.3420097231864929, - 0.3293308615684509, - 0.318451464176178, - 0.31466978788375854, - 0.308395117521286, - 0.30794060230255127, - 0.3046301007270813, - 0.2827085852622986, - 0.281875342130661, - 0.28082770109176636, - 0.2804528772830963, - 0.2742983400821686, - 0.2715050280094147, - 0.27071818709373474, - 0.2695467472076416, - 0.25990068912506104, - 0.25990068912506104, - 0.24827904999256134, - 0.24662022292613983, - 0.24632100760936737, - 0.2461635172367096, - 0.24212227761745453, - 0.23135530948638916, - 0.2296244353055954 + 1.0, + 0.475284, + 0.361542, + 0.345431, + 0.345431, + 0.34201, + 0.329331, + 0.318452, + 0.31467, + 0.308395, + 0.307941, + 0.30463, + 0.282709, + 0.281875, + 0.280828, + 0.280453, + 0.274298, + 0.271505, + 0.270718, + 0.269547, + 0.259901, + 0.259901, + 0.248279, + 0.24662, + 0.246321, + 0.246163, + 0.242122, + 0.231355, + 0.229624 ], "PROP": [ "phylum", diff --git a/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json b/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json index 4f8acbe246..c505e21788 100644 --- a/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json +++ b/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json @@ -12,30 +12,30 @@ "query_with_places_removed": "what types of genes are and", "sv_matching": { "CosineScore": [ - 0.5237791538238525, - 0.4451894760131836, - 0.4198145866394043, - 0.41922125220298767, - 0.41366666555404663, - 0.4096527099609375, - 0.4066110849380493, - 0.4013715386390686, - 0.4010191559791565, - 0.40063756704330444, - 0.39874646067619324, - 0.39836058020591736, - 0.39052361249923706, - 0.38903331756591797, - 0.3884609639644623, - 0.3883824050426483, - 0.3873301148414612, - 0.38642188906669617, - 0.3858962655067444, - 0.3856789469718933, - 0.3854343295097351, - 0.38533878326416016, - 0.38184264302253723, - 0.37970495223999023 + 0.523779, + 0.445189, + 0.419815, + 0.419221, + 0.413667, + 0.409652, + 0.406611, + 0.401371, + 0.401019, + 0.400638, + 0.398746, + 0.398361, + 0.390524, + 0.389033, + 0.388461, + 0.388382, + 0.38733, + 0.386422, + 0.385896, + 0.385679, + 0.385434, + 0.385339, + 0.381843, + 0.379705 ], "MultiSV": {}, "Query": "what types of genes are and", @@ -68,32 +68,32 @@ }, "props_matching": { "CosineScore": [ - 0.9086110591888428, - 0.7445294260978699, - 0.7330226898193359, - 0.7175887823104858, - 0.6834690570831299, - 0.6590196490287781, - 0.6357895731925964, - 0.6340402364730835, - 0.6171568036079407, - 0.5988123416900635, - 0.5958784818649292, - 0.5850145220756531, - 0.5832706689834595, - 0.5810792446136475, - 0.576904296875, - 0.5432419776916504, - 0.5399729013442993, - 0.5320467948913574, - 0.5309585332870483, - 0.5142703056335449, - 0.5125279426574707, - 0.46105992794036865, - 0.4441080689430237, - 0.39822953939437866, - 0.3944427967071533, - 0.39229002594947815 + 0.908611, + 0.744529, + 0.733023, + 0.717589, + 0.683469, + 0.65902, + 0.63579, + 0.63404, + 0.617157, + 0.598812, + 0.595879, + 0.585015, + 0.583271, + 0.581079, + 0.576904, + 0.543242, + 0.539973, + 0.532047, + 0.530959, + 0.51427, + 0.512528, + 0.46106, + 0.444108, + 0.398229, + 0.394443, + 0.39229 ], "PROP": [ "typeOfGene", diff --git a/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json index 5a672b4906..aba5931ec3 100644 --- a/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/comparemalepopulationwithfemalepopulation/debug_info.json @@ -8,43 +8,43 @@ "query_with_places_removed": "compare male population with female population", "sv_matching": { "CosineScore": [ - 0.9187595844268799, - 0.8590543866157532, - 0.8354092836380005, - 0.7823134660720825, - 0.7773187756538391, - 0.7762894630432129, - 0.7663271427154541, - 0.766107439994812, - 0.7614184617996216, - 0.7606041431427002, - 0.7595797181129456, - 0.7573733329772949, - 0.7573024034500122, - 0.757297158241272, - 0.7553009390830994, - 0.7533451318740845, - 0.7532937526702881, - 0.7509560585021973, - 0.7482578754425049, - 0.7451456785202026, - 0.7443947792053223, - 0.7431552410125732, - 0.7426693439483643, - 0.7396597862243652, - 0.7371534109115601, - 0.7366002798080444, - 0.7347153425216675, - 0.733651876449585, - 0.732607901096344, - 0.7325160503387451, - 0.7302997708320618, - 0.7299268841743469, - 0.7289118766784668, - 0.7289034724235535, - 0.7280722260475159, - 0.7259584665298462, - 0.7259330153465271 + 0.918759, + 0.859054, + 0.835409, + 0.782314, + 0.777319, + 0.776289, + 0.766327, + 0.766107, + 0.761419, + 0.760604, + 0.75958, + 0.757373, + 0.757302, + 0.757297, + 0.755301, + 0.753345, + 0.753294, + 0.750956, + 0.748258, + 0.745145, + 0.744395, + 0.743156, + 0.742669, + 0.73966, + 0.737154, + 0.7366, + 0.734715, + 0.733652, + 0.732608, + 0.732516, + 0.730299, + 0.729926, + 0.728912, + 0.728904, + 0.728073, + 0.725958, + 0.725933 ], "MultiSV": { "Candidates": [ @@ -54,7 +54,7 @@ "Parts": [ { "CosineScore": [ - 0.9257855415344238 + 0.925785 ], "QueryPart": "male population", "SV": [ @@ -63,8 +63,8 @@ }, { "CosineScore": [ - 0.9296979904174805, - 0.8847434520721436 + 0.929698, + 0.884743 ], "QueryPart": "female population", "SV": [ @@ -80,7 +80,7 @@ "Parts": [ { "CosineScore": [ - 0.9117770195007324 + 0.911777 ], "QueryPart": "male population female", "SV": [ @@ -89,8 +89,8 @@ }, { "CosineScore": [ - 0.8982378244400024, - 0.8723466396331787 + 0.898237, + 0.872347 ], "QueryPart": "population", "SV": [ @@ -106,10 +106,10 @@ "Parts": [ { "CosineScore": [ - 0.808887243270874, - 0.8034241199493408, - 0.8017654418945312, - 0.775155782699585 + 0.808887, + 0.803424, + 0.801765, + 0.775156 ], "QueryPart": "male", "SV": [ @@ -121,8 +121,8 @@ }, { "CosineScore": [ - 0.9170327186584473, - 0.873018741607666 + 0.917033, + 0.873019 ], "QueryPart": "population female population", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json index 83ff52431b..1568745bee 100644 --- a/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/compareobesityvs.poverty/debug_info.json @@ -8,35 +8,35 @@ "query_with_places_removed": "compare obesity vs poverty", "sv_matching": { "CosineScore": [ - 0.8778442740440369, - 0.7967699766159058, - 0.762496829032898, - 0.7499465942382812, - 0.7484047412872314, - 0.7442895174026489, - 0.7357541918754578, - 0.7350349426269531, - 0.7310354709625244, - 0.7289618253707886, - 0.7266261577606201, - 0.7264261841773987, - 0.7264261841773987, - 0.7253916263580322, - 0.7230079174041748, - 0.7139475345611572, - 0.7126950621604919, - 0.7094853520393372, - 0.7085550427436829, - 0.7085551023483276, - 0.7078822255134583, - 0.7077707052230835, - 0.7045387029647827, - 0.7024303078651428, - 0.7004534602165222, - 0.6994997262954712, - 0.6956704258918762, - 0.6947906613349915, - 0.6913242936134338 + 0.877844, + 0.79677, + 0.762497, + 0.749946, + 0.748405, + 0.74429, + 0.735754, + 0.735035, + 0.731035, + 0.728962, + 0.726626, + 0.726426, + 0.726426, + 0.725391, + 0.723008, + 0.713948, + 0.712695, + 0.709485, + 0.708555, + 0.708554, + 0.707882, + 0.707771, + 0.704539, + 0.702431, + 0.700454, + 0.699499, + 0.69567, + 0.694791, + 0.691324 ], "MultiSV": { "Candidates": [ @@ -46,10 +46,10 @@ "Parts": [ { "CosineScore": [ - 0.8467836380004883, - 0.8316553831100464, - 0.8201552033424377, - 0.8177061080932617 + 0.846783, + 0.831656, + 0.820154, + 0.817707 ], "QueryPart": "obesity", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json index bef680e6ec..f64e778aa2 100644 --- a/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json @@ -8,34 +8,34 @@ "query_with_places_removed": "how are factors like obesity , blood pressure and asthma impacted by climate change", "sv_matching": { "CosineScore": [ - 0.7864793539047241, - 0.7135567665100098, - 0.691805362701416, - 0.6740915179252625, - 0.6734591722488403, - 0.6704620718955994, - 0.6635113954544067, - 0.6593924760818481, - 0.6520178318023682, - 0.6484817266464233, - 0.6461696624755859, - 0.6459026336669922, - 0.6435545682907104, - 0.6410900354385376, - 0.6405231952667236, - 0.6402113437652588, - 0.6384210586547852, - 0.6380343437194824, - 0.6376464366912842, - 0.6346377730369568, - 0.6341456174850464, - 0.6338476538658142, - 0.6322696805000305, - 0.6322205662727356, - 0.6304948925971985, - 0.6302965879440308, - 0.6298357844352722, - 0.6295678019523621 + 0.786479, + 0.713557, + 0.691806, + 0.674092, + 0.673459, + 0.670462, + 0.663511, + 0.659393, + 0.652018, + 0.648482, + 0.64617, + 0.645903, + 0.643554, + 0.64109, + 0.640523, + 0.640211, + 0.638421, + 0.638034, + 0.637647, + 0.634637, + 0.634146, + 0.633848, + 0.63227, + 0.632221, + 0.630495, + 0.630297, + 0.629835, + 0.629568 ], "MultiSV": { "Candidates": [ @@ -45,7 +45,7 @@ "Parts": [ { "CosineScore": [ - 0.7997788786888123 + 0.799779 ], "QueryPart": "factors like obesity blood pressure asthma impacted", "SV": [ @@ -69,11 +69,11 @@ "Parts": [ { "CosineScore": [ - 0.7588618993759155, - 0.7463642954826355, - 0.740165650844574, - 0.7351235151290894, - 0.7130995988845825 + 0.758863, + 0.746364, + 0.740165, + 0.735123, + 0.713099 ], "QueryPart": "factors like obesity", "SV": [ @@ -86,7 +86,7 @@ }, { "CosineScore": [ - 0.9999995827674866 + 1.0 ], "QueryPart": "blood pressure", "SV": [ @@ -95,8 +95,8 @@ }, { "CosineScore": [ - 0.8255698084831238, - 0.8027870655059814 + 0.82557, + 0.802787 ], "QueryPart": "asthma impacted climate change", "SV": [ @@ -112,10 +112,10 @@ "Parts": [ { "CosineScore": [ - 0.7768431901931763, - 0.7495046257972717, - 0.7342654466629028, - 0.7325114011764526 + 0.776843, + 0.749504, + 0.734266, + 0.732511 ], "QueryPart": "factors like obesity blood pressure asthma", "SV": [ @@ -127,7 +127,7 @@ }, { "CosineScore": [ - 0.9056921005249023 + 0.905692 ], "QueryPart": "impacted climate change", "SV": [ @@ -142,7 +142,7 @@ "Parts": [ { "CosineScore": [ - 0.8207905888557434 + 0.82079 ], "QueryPart": "factors like obesity blood pressure", "SV": [ @@ -151,8 +151,8 @@ }, { "CosineScore": [ - 0.8255698084831238, - 0.8027870655059814 + 0.82557, + 0.802787 ], "QueryPart": "asthma impacted climate change", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json index 9732c39707..aca640ac56 100644 --- a/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/numberofpoorhispanicwomenwithphd/debug_info.json @@ -8,46 +8,46 @@ "query_with_places_removed": "number of poor hispanic women with phd", "sv_matching": { "CosineScore": [ - 0.7985796332359314, - 0.7883262634277344, - 0.776346743106842, - 0.77406245470047, - 0.7410296201705933, - 0.7334667444229126, - 0.7228284478187561, - 0.722568929195404, - 0.6995474100112915, - 0.6995023488998413, - 0.697618305683136, - 0.6974341869354248, - 0.696003794670105, - 0.6953426003456116, - 0.6945168972015381, - 0.6939643621444702, - 0.6935360431671143, - 0.6908406019210815, - 0.6906974911689758, - 0.6896734237670898, - 0.6889521479606628, - 0.6886201500892639, - 0.6863292455673218, - 0.6859177947044373, - 0.6827540397644043, - 0.6822139620780945, - 0.6815624237060547, - 0.67987459897995, - 0.676856517791748, - 0.6763089299201965, - 0.6751540303230286, - 0.6744991540908813, - 0.6725671291351318, - 0.6717973947525024, - 0.6691675186157227, - 0.6690007448196411, - 0.6682180762290955, - 0.6678104400634766, - 0.6650688052177429, - 0.6648702621459961 + 0.798579, + 0.788326, + 0.776347, + 0.774063, + 0.741029, + 0.733466, + 0.722829, + 0.722569, + 0.699547, + 0.699502, + 0.697618, + 0.697434, + 0.696003, + 0.695344, + 0.694517, + 0.693964, + 0.693537, + 0.69084, + 0.690697, + 0.689673, + 0.688952, + 0.688619, + 0.686329, + 0.685918, + 0.682754, + 0.682214, + 0.681563, + 0.679874, + 0.676856, + 0.676309, + 0.675155, + 0.674499, + 0.672567, + 0.671798, + 0.669168, + 0.669001, + 0.668218, + 0.667811, + 0.665069, + 0.66487 ], "MultiSV": { "Candidates": [ @@ -57,17 +57,17 @@ "Parts": [ { "CosineScore": [ - 0.8311771750450134, - 0.8310011029243469, - 0.8255152702331543, - 0.8195514678955078, - 0.8145602345466614, - 0.8090661764144897, - 0.8086389303207397, - 0.8074402809143066, - 0.8002950549125671, - 0.7985796332359314, - 0.787818193435669 + 0.831177, + 0.831001, + 0.825516, + 0.819551, + 0.814561, + 0.809067, + 0.808639, + 0.80744, + 0.800295, + 0.79858, + 0.787818 ], "QueryPart": "number of poor hispanic", "SV": [ @@ -86,8 +86,8 @@ }, { "CosineScore": [ - 0.8318259119987488, - 0.8029923439025879 + 0.831826, + 0.802992 ], "QueryPart": "women phd", "SV": [ @@ -103,8 +103,8 @@ "Parts": [ { "CosineScore": [ - 0.8366719484329224, - 0.7972691059112549 + 0.836672, + 0.79727 ], "QueryPart": "number of poor", "SV": [ @@ -114,10 +114,10 @@ }, { "CosineScore": [ - 0.8151505589485168, - 0.7885995507240295, - 0.7775554656982422, - 0.7752053141593933 + 0.81515, + 0.788599, + 0.777556, + 0.775205 ], "QueryPart": "hispanic women phd", "SV": [ @@ -135,8 +135,8 @@ "Parts": [ { "CosineScore": [ - 0.8495935201644897, - 0.8335005044937134 + 0.849593, + 0.833502 ], "QueryPart": "number of poor hispanic women", "SV": [ @@ -146,11 +146,11 @@ }, { "CosineScore": [ - 0.7646968960762024, - 0.7476688027381897, - 0.7377066612243652, - 0.7362767457962036, - 0.7305882573127747 + 0.764697, + 0.747669, + 0.737706, + 0.736277, + 0.730588 ], "QueryPart": "phd", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json index 1b3a9e23bc..3e7d7334f1 100644 --- a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json @@ -8,30 +8,30 @@ "query_with_places_removed": "show me the impact of climate change on drought", "sv_matching": { "CosineScore": [ - 0.8393681645393372, - 0.79311203956604, - 0.7699974775314331, - 0.7208107709884644, - 0.7175306081771851, - 0.6995436549186707, - 0.6863456964492798, - 0.674246609210968, - 0.6730499267578125, - 0.6703540682792664, - 0.6652892827987671, - 0.6644606590270996, - 0.6353792548179626, - 0.6349931359291077, - 0.6347004771232605, - 0.630818247795105, - 0.6290862560272217, - 0.6256592273712158, - 0.6180376410484314, - 0.6162123084068298, - 0.6141720414161682, - 0.6139707565307617, - 0.6138609647750854, - 0.6123877167701721 + 0.839369, + 0.793112, + 0.769998, + 0.72081, + 0.717531, + 0.699544, + 0.686345, + 0.674246, + 0.673051, + 0.670354, + 0.665289, + 0.664461, + 0.635379, + 0.634994, + 0.6347, + 0.630818, + 0.629086, + 0.625659, + 0.618038, + 0.616212, + 0.614172, + 0.613971, + 0.613861, + 0.612388 ], "MultiSV": { "Candidates": [ @@ -41,7 +41,7 @@ "Parts": [ { "CosineScore": [ - 0.8787487149238586 + 0.878748 ], "QueryPart": "show climate change", "SV": [ @@ -50,7 +50,7 @@ }, { "CosineScore": [ - 0.9999998807907104 + 1.0 ], "QueryPart": "drought", "SV": [ @@ -65,8 +65,8 @@ "Parts": [ { "CosineScore": [ - 0.794236958026886, - 0.7929013967514038 + 0.794237, + 0.792901 ], "QueryPart": "show climate", "SV": [ @@ -76,7 +76,7 @@ }, { "CosineScore": [ - 0.866512656211853 + 0.866513 ], "QueryPart": "change drought", "SV": [ From 18e5b7696da72632937a3a814d60f9010a772a7d Mon Sep 17 00:00:00 2001 From: Keyur Shah Date: Fri, 8 Nov 2024 08:49:21 -0800 Subject: [PATCH 08/11] Update submods. (#4723) --- mixer | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/mixer b/mixer index 656512fee5..e9bfc26c6d 160000 --- a/mixer +++ b/mixer @@ -1 +1 @@ -Subproject commit 656512fee5e3c701b52a3ee26db35ba91a81bd2b +Subproject commit e9bfc26c6d7559ad9dd664a94509a827cad62d70 From eae2dcee052f10917eb3b4e67843f1be1827c5cd Mon Sep 17 00:00:00 2001 From: Keyur Shah Date: Fri, 8 Nov 2024 10:07:23 -0800 Subject: [PATCH 09/11] Update goldens. (#4724) --- .../query_7/chart_config.json | 37 - .../whatisthephylumofvolvox/debug_info.json | 6 +- .../debug_info.json | 1260 ++- .../debug_info.json | 2 +- .../debug_info.json | 2 +- .../emissionsinhouston/chart_config.json | 663 +- .../chart_config.json | 266 - .../chart_config.json | 48 +- .../chart_config.json | 53 +- .../chart_config.json | 7 - .../chart_config.json | 87 +- .../chart_config.json | 7 - .../chart_config.json | 7 - .../howaboutforp53/chart_config.json | 707 +- .../chart_config.json | 166 +- .../chart_config.json | 44 +- .../chart_config.json | 2607 +++++- .../chart_config.json | 2607 +++++- .../chart_config.json | 111 +- .../cultureiniran/chart_config.json | 1183 +-- .../chart_config.json | 7830 +---------------- .../chart_config.json | 42 - .../fulfillment_api_undata/chart_config.json | 280 +- .../international/query_2/chart_config.json | 298 - .../international/query_4/chart_config.json | 32 - .../test_data/sdg/query_3/chart_config.json | 595 -- 26 files changed, 7732 insertions(+), 11215 deletions(-) diff --git a/server/integration_tests/test_data/demo2_cities_feb2023/query_7/chart_config.json b/server/integration_tests/test_data/demo2_cities_feb2023/query_7/chart_config.json index 5f553c5e2e..914842a592 100644 --- a/server/integration_tests/test_data/demo2_cities_feb2023/query_7/chart_config.json +++ b/server/integration_tests/test_data/demo2_cities_feb2023/query_7/chart_config.json @@ -204,39 +204,6 @@ } ], "title": "Population" - }, - { - "columns": [ - { - "tiles": [ - { - "barTileSpec": { - "maxPlaces": 15, - "maxVariables": 15, - "sort": "DESCENDING" - }, - "comparisonPlaces": [ - "country/DZA", - "country/MAR", - "country/LBY", - "country/TUN", - "country/MLI", - "country/ERI", - "country/SEN", - "country/GMB", - "country/MWI", - "country/SSD" - ], - "statVarKey": [ - "WHO/CM_02_multiple_place_bar_block" - ], - "title": "Number of Infant Deaths (${date})", - "type": "BAR" - } - ] - } - ], - "title": "Number of Infant Deaths" } ], "statVarSpec": { @@ -260,10 +227,6 @@ "name": "Rate of Population Growth", "statVar": "GrowthRate_Count_Person" }, - "WHO/CM_02_multiple_place_bar_block": { - "name": "Number Of Infant Deaths", - "statVar": "WHO/CM_02" - }, "sdg/SP_DYN_ADKL.AGE--Y10T14__SEX--F_multiple_place_bar_block": { "name": "Adolescent birth rate [10 to 14 years old, Female]", "statVar": "sdg/SP_DYN_ADKL.AGE--Y10T14__SEX--F" diff --git a/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json b/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json index 3874180d73..3b57174311 100644 --- a/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json +++ b/server/integration_tests/test_data/detection_api_bio/whatisthephylumofvolvox/debug_info.json @@ -24,7 +24,7 @@ 0.314266, 0.312765, 0.312629, - 0.312505, + 0.312504, 0.311774, 0.310339, 0.310075, @@ -89,8 +89,8 @@ 0.248279, 0.24662, 0.246321, - 0.246163, - 0.242122, + 0.246164, + 0.242123, 0.231355, 0.229624 ], diff --git a/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json b/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json index c505e21788..524cf98484 100644 --- a/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json +++ b/server/integration_tests/test_data/detection_api_bio/whattypesofgenesarefgfr1,apoe,andache/debug_info.json @@ -4,12 +4,13 @@ "main_place_dcid": "", "main_place_name": "", "entities_detected": [ + "are", "fgfr1", ", apoe ,", "ache" ], - "entities_resolved": "(name: FGFR1, dcid: bio/FGFR1); (name: APOE, dcid: bio/APOE); (name: ACHE, dcid: bio/ACHE); ", - "query_with_places_removed": "what types of genes are and", + "entities_resolved": "(name: are, dcid: bio/ncbi_59246804); (name: are, dcid: bio/ncbi_59275321); (name: FGFR1, dcid: bio/FGFR1); (name: FGFR1, dcid: bio/ncbi_100029852); (name: FGFR1, dcid: bio/ncbi_100057614); (name: FGFR1, dcid: bio/ncbi_100074240); (name: FGFR1, dcid: bio/ncbi_100153248); (name: FGFR1, dcid: bio/ncbi_100174545); (name: FGFR1, dcid: bio/ncbi_100221243); (name: FGFR1, dcid: bio/ncbi_100351861); (name: FGFR1, dcid: bio/ncbi_100390192); (name: FGFR1, dcid: bio/ncbi_100472630); (name: FGFR1, dcid: bio/ncbi_100547498); (name: fgfr1, dcid: bio/ncbi_100559018); (name: FGFR1, dcid: bio/ncbi_100602423); (name: FGFR1, dcid: bio/ncbi_100662289); (name: Fgfr1, dcid: bio/ncbi_100731156); (name: Fgfr1, dcid: bio/ncbi_100773586); (name: FGFR1, dcid: bio/ncbi_100856477); (name: FGFR1, dcid: bio/ncbi_100914347); (name: FGFR1, dcid: bio/ncbi_100960708); (name: FGFR1, dcid: bio/ncbi_100988115); (name: FGFR1, dcid: bio/ncbi_101002603); (name: FGFR1, dcid: bio/ncbi_101033213); (name: FGFR1, dcid: bio/ncbi_101086055); (name: FGFR1, dcid: bio/ncbi_101152179); (name: FGFR1, dcid: bio/ncbi_101279623); (name: FGFR1, dcid: bio/ncbi_101338609); (name: FGFR1, dcid: bio/ncbi_101342270); (name: FGFR1, dcid: bio/ncbi_101364849); (name: FGFR1, dcid: bio/ncbi_101427669); (name: FGFR1, dcid: bio/ncbi_101534918); (name: FGFR1, dcid: bio/ncbi_101544250); (name: Fgfr1, dcid: bio/ncbi_101588120); (name: Fgfr1, dcid: bio/ncbi_101617102); (name: FGFR1, dcid: bio/ncbi_101629379); (name: FGFR1, dcid: bio/ncbi_101650479); (name: FGFR1, dcid: bio/ncbi_101691149); (name: Fgfr1, dcid: bio/ncbi_101700324); (name: FGFR1, dcid: bio/ncbi_101822220); (name: Fgfr1, dcid: bio/ncbi_101842486); (name: FGFR1, dcid: bio/ncbi_101914093); (name: FGFR1, dcid: bio/ncbi_101941076); (name: Fgfr1, dcid: bio/ncbi_101977965); (name: Fgfr1, dcid: bio/ncbi_101998996); (name: Fgfr1, dcid: bio/ncbi_102024657); (name: FGFR1, dcid: bio/ncbi_102055369); (name: FGFR1, dcid: bio/ncbi_102085235); (name: FGFR1, dcid: bio/ncbi_102103637); (name: FGFR1, dcid: bio/ncbi_102144714); (name: FGFR1, dcid: bio/ncbi_102180282); (name: FGFR1, dcid: bio/ncbi_102253832); (name: FGFR1, dcid: bio/ncbi_102267776); (name: FGFR1, dcid: bio/ncbi_102386174); (name: FGFR1, dcid: bio/ncbi_102407288); (name: FGFR1, dcid: bio/ncbi_102423450); (name: FGFR1, dcid: bio/ncbi_102461506); (name: FGFR1, dcid: bio/ncbi_102484087); (name: FGFR1, dcid: bio/ncbi_102515264); (name: FGFR1, dcid: bio/ncbi_102531272); (name: FGFR1, dcid: bio/ncbi_102574117); (name: FGFR1, dcid: bio/ncbi_102734086); (name: FGFR1, dcid: bio/ncbi_102759202); (name: FGFR1, dcid: bio/ncbi_102836047); (name: FGFR1, dcid: bio/ncbi_102868898); (name: FGFR1, dcid: bio/ncbi_102898943); (name: Fgfr1, dcid: bio/ncbi_102925907); (name: FGFR1, dcid: bio/ncbi_102942878); (name: FGFR1, dcid: bio/ncbi_102972346); (name: FGFR1, dcid: bio/ncbi_102989551); (name: FGFR1, dcid: bio/ncbi_103017733); (name: FGFR1, dcid: bio/ncbi_103066603); (name: FGFR1, dcid: bio/ncbi_103069902); (name: FGFR1, dcid: bio/ncbi_103107883); (name: FGFR1, dcid: bio/ncbi_103192070); (name: FGFR1, dcid: bio/ncbi_103215648); (name: FGFR1, dcid: bio/ncbi_103274944); (name: FGFR1, dcid: bio/ncbi_103290249); (name: FGFR1, dcid: bio/ncbi_103535383); (name: FGFR1, dcid: bio/ncbi_103560266); (name: FGFR1, dcid: bio/ncbi_103598755); (name: FGFR1, dcid: bio/ncbi_103614656); (name: FGFR1, dcid: bio/ncbi_103659146); (name: Fgfr1, dcid: bio/ncbi_103745770); (name: FGFR1, dcid: bio/ncbi_103763194); (name: FGFR1, dcid: bio/ncbi_103822693); (name: FGFR1, dcid: bio/ncbi_103897295); (name: FGFR1, dcid: bio/ncbi_103912362); (name: FGFR1, dcid: bio/ncbi_104016019); (name: FGFR1, dcid: bio/ncbi_104068578); (name: FGFR1, dcid: bio/ncbi_104135322); (name: FGFR1, dcid: bio/ncbi_104148747); (name: FGFR1, dcid: bio/ncbi_104254434); (name: FGFR1, dcid: bio/ncbi_104301278); (name: FGFR1, dcid: bio/ncbi_104384843); (name: FGFR1, dcid: bio/ncbi_104553496); (name: FGFR1, dcid: bio/ncbi_104576676); (name: FGFR1, dcid: bio/ncbi_104679640); (name: FGFR1, dcid: bio/ncbi_104694904); (name: FGFR1, dcid: bio/ncbi_104828804); (name: Fgfr1, dcid: bio/ncbi_104848740); (name: FGFR1, dcid: bio/ncbi_104987781); (name: FGFR1, dcid: bio/ncbi_105071441); (name: FGFR1, dcid: bio/ncbi_105105270); (name: FGFR1, dcid: bio/ncbi_105300315); (name: FGFR1, dcid: bio/ncbi_105476567); (name: FGFR1, dcid: bio/ncbi_105525157); (name: FGFR1, dcid: bio/ncbi_105590801); (name: FGFR1, dcid: bio/ncbi_105733510); (name: FGFR1, dcid: bio/ncbi_105815854); (name: FGFR1, dcid: bio/ncbi_105870403); (name: Fgfr1, dcid: bio/ncbi_105992799); (name: FGFR1, dcid: bio/ncbi_106044374); (name: FGFR1, dcid: bio/ncbi_106492992); (name: FGFR1, dcid: bio/ncbi_106545617); (name: FGFR1, dcid: bio/ncbi_106824659); (name: FGFR1, dcid: bio/ncbi_106862051); (name: FGFR1, dcid: bio/ncbi_106896165); (name: FGFR1, dcid: bio/ncbi_106978376); (name: FGFR1, dcid: bio/ncbi_107113006); (name: Fgfr1, dcid: bio/ncbi_107155394); (name: FGFR1, dcid: bio/ncbi_107213845); (name: FGFR1, dcid: bio/ncbi_107289991); (name: FGFR1, dcid: bio/ncbi_107323773); (name: FGFR1, dcid: bio/ncbi_107515961); (name: FGFR1, dcid: bio/ncbi_107535065); (name: FGFR1, dcid: bio/ncbi_108309970); (name: FGFR1, dcid: bio/ncbi_108403050); (name: FGFR1, dcid: bio/ncbi_108505671); (name: FGFR1, dcid: bio/ncbi_108512401); (name: FGFR1, dcid: bio/ncbi_108791453); (name: FGFR1, dcid: bio/ncbi_109262303); (name: FGFR1, dcid: bio/ncbi_109295541); (name: FGFR1, dcid: bio/ncbi_109317416); (name: FGFR1, dcid: bio/ncbi_109373149); (name: FGFR1, dcid: bio/ncbi_109456079); (name: FGFR1, dcid: bio/ncbi_109553304); (name: Fgfr1, dcid: bio/ncbi_109688936); (name: FGFR1, dcid: bio/ncbi_110072166); (name: FGFR1, dcid: bio/ncbi_110126587); (name: FGFR1, dcid: bio/ncbi_110207578); (name: Fgfr1, dcid: bio/ncbi_110299550); (name: Fgfr1, dcid: bio/ncbi_110336809); (name: FGFR1, dcid: bio/ncbi_110387131); (name: FGFR1, dcid: bio/ncbi_110473397); (name: Fgfr1, dcid: bio/ncbi_110563307); (name: FGFR1, dcid: bio/ncbi_110573154); (name: FGFR1, dcid: bio/ncbi_111173523); (name: FGFR1, dcid: bio/ncbi_111544121); (name: FGFR1, dcid: bio/ncbi_111938850); (name: FGFR1, dcid: bio/ncbi_112111651); (name: FGFR1, dcid: bio/ncbi_112306733); (name: FGFR1, dcid: bio/ncbi_112413123); (name: FGFR1, dcid: bio/ncbi_112629744); (name: FGFR1, dcid: bio/ncbi_112649669); (name: FGFR1, dcid: bio/ncbi_112834662); (name: FGFR1, dcid: bio/ncbi_112858029); (name: FGFR1, dcid: bio/ncbi_112916136); (name: FGFR1, dcid: bio/ncbi_112952906); (name: FGFR1, dcid: bio/ncbi_112965467); (name: FGFR1, dcid: bio/ncbi_112991606); (name: Fgfr1, dcid: bio/ncbi_113193875); (name: FGFR1, dcid: bio/ncbi_113262086); (name: FGFR1, dcid: bio/ncbi_113420990); (name: FGFR1, dcid: bio/ncbi_113628878); (name: FGFR1, dcid: bio/ncbi_113884771); (name: FGFR1, dcid: bio/ncbi_113924319); (name: FGFR1, dcid: bio/ncbi_113958636); (name: FGFR1, dcid: bio/ncbi_113978937); (name: FGFR1, dcid: bio/ncbi_114000501); (name: FGFR1, dcid: bio/ncbi_114045132); (name: FGFR1, dcid: bio/ncbi_114066493); (name: Fgfr1, dcid: bio/ncbi_114095896); (name: FGFR1, dcid: bio/ncbi_114224838); (name: FGFR1, dcid: bio/ncbi_114508370); (name: FGFR1, dcid: bio/ncbi_114585343); (name: Fgfr1, dcid: bio/ncbi_114621844); (name: Fgfr1, dcid: bio/ncbi_114681341); (name: FGFR1, dcid: bio/ncbi_114897510); (name: FGFR1, dcid: bio/ncbi_115092712); (name: FGFR1, dcid: bio/ncbi_115288965); (name: FGFR1, dcid: bio/ncbi_115350076); (name: FGFR1, dcid: bio/ncbi_115469362); (name: FGFR1, dcid: bio/ncbi_115512001); (name: FGFR1, dcid: bio/ncbi_115618404); (name: FGFR1, dcid: bio/ncbi_115646411); (name: FGFR1, dcid: bio/ncbi_115840502); (name: FGFR1, dcid: bio/ncbi_115912547); (name: Fgfr1, dcid: bio/ncbi_116069056); (name: FGFR1, dcid: bio/ncbi_116234528); (name: FGFR1, dcid: bio/ncbi_116435512); (name: FGFR1, dcid: bio/ncbi_116462129); (name: FGFR1, dcid: bio/ncbi_116499369); (name: FGFR1, dcid: bio/ncbi_116516298); (name: FGFR1, dcid: bio/ncbi_116558317); (name: FGFR1, dcid: 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"bio/ncbi_131506723", + "bio/ncbi_131568234", + "bio/ncbi_131589574", + "bio/ncbi_131747394", + "bio/ncbi_131820646", + "bio/ncbi_131894317", + "bio/ncbi_132006317", + "bio/ncbi_132085309", + "bio/ncbi_132228629", + "bio/ncbi_132340003", + "bio/ncbi_132356642", + "bio/ncbi_132417589", + "bio/ncbi_132481231", + "bio/ncbi_132512743", + "bio/ncbi_132580696", + "bio/ncbi_132691808", + "bio/ncbi_132782814", + "bio/ncbi_133050609", + "bio/ncbi_133081191", + "bio/ncbi_133210375", + "bio/ncbi_133240011", + "bio/ncbi_133279078", + "bio/ncbi_133368378", + "bio/ncbi_133775339", + "bio/ncbi_134054801", + "bio/ncbi_134151986", + "bio/ncbi_134164844", + "bio/ncbi_134361584", + "bio/ncbi_134407481", + "bio/ncbi_134428540", + "bio/ncbi_134502736", + "bio/ncbi_134526559", + "bio/ncbi_134562645", + "bio/ncbi_134602949", + "bio/ncbi_134936489", + "bio/ncbi_135192481", + "bio/ncbi_135287060", + "bio/ncbi_135317111", + "bio/ncbi_135403713", + "bio/ncbi_135456901", + "bio/ncbi_135873608", + "bio/ncbi_135998389", + "bio/ncbi_136003469", + "bio/ncbi_136055404", + "bio/ncbi_136112305", + "bio/ncbi_136141836", + "bio/ncbi_136176884", + "bio/ncbi_136302859", + "bio/ncbi_136309122", + "bio/ncbi_136372585", + "bio/ncbi_136402705", + "bio/ncbi_136567545", + "bio/ncbi_136612758", + "bio/ncbi_136662257", + "bio/ncbi_137150943", + "bio/ncbi_137216053", + "bio/ncbi_137450336", + "bio/ncbi_137463441", + "bio/ncbi_137562857", + "bio/ncbi_137675452", + "bio/ncbi_137756000", + "bio/ncbi_137845221", + "bio/ncbi_138079229", + "bio/ncbi_138121591", + "bio/ncbi_138152113", + "bio/ncbi_138265881", + "bio/ncbi_14182", + "bio/ncbi_281768", + "bio/ncbi_396516", + "bio/ncbi_464122", + "bio/ncbi_548648", + "bio/ncbi_700126", + "bio/ncbi_780507", + "bio/ncbi_79114" ] }, "dc_recognize_places": {}, @@ -144,12 +1382,12 @@ "places_found_str": [], "query_transformations": { "place_detection_input": "What types of genes are FGFR1, APOE, and ACHE", - "place_detection_with_places_removed": "what types of genes are and", + "place_detection_with_places_removed": "what types of genes and", "sv_detection_query_index_types": [ "medium_ft", "bio_ft" ], - "sv_detection_query_input": "what types of genes are and", + "sv_detection_query_input": "what types of genes and", "sv_detection_query_stop_words_removal": "types genes" } } diff --git a/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json index f64e778aa2..3da8c3e1bd 100644 --- a/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/howarefactorslikeobesity,bloodpressureandasthmaimpactedbyclimatechange/debug_info.json @@ -73,7 +73,7 @@ 0.746364, 0.740165, 0.735123, - 0.713099 + 0.7131 ], "QueryPart": "factors like obesity", "SV": [ diff --git a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json index 3e7d7334f1..56c5a34f93 100644 --- a/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json +++ b/server/integration_tests/test_data/detection_api_multivar/showmetheimpactofclimatechangeondrought/debug_info.json @@ -66,7 +66,7 @@ { "CosineScore": [ 0.794237, - 0.792901 + 0.792902 ], "QueryPart": "show climate", "SV": [ diff --git a/server/integration_tests/test_data/e2e_edge_cases/emissionsinhouston/chart_config.json b/server/integration_tests/test_data/e2e_edge_cases/emissionsinhouston/chart_config.json index 753915ad0a..156c685ed3 100644 --- a/server/integration_tests/test_data/e2e_edge_cases/emissionsinhouston/chart_config.json +++ b/server/integration_tests/test_data/e2e_edge_cases/emissionsinhouston/chart_config.json @@ -10,9 +10,9 @@ "tiles": [ { "statVarKey": [ - "Annual_Emissions_GreenhouseGas_NonBiogenic" + "Annual_Emissions_GreenhouseGas" ], - "title": "Annual Emissions of Non Biogenic Greenhouse Gases in Fort Bend County", + "title": "Greenhouse Gas Emissions in United States", "type": "LINE" } ] @@ -20,67 +20,55 @@ { "tiles": [ { - "description": "Annual Emissions of Non Biogenic Greenhouse Gases in Fort Bend County", + "description": "Greenhouse Gas Emissions in United States", "statVarKey": [ - "Annual_Emissions_GreenhouseGas_NonBiogenic" + "Annual_Emissions_GreenhouseGas" ], - "title": "Annual Emissions of Non Biogenic Greenhouse Gases in Fort Bend County", + "title": "Greenhouse Gas Emissions in United States", "type": "HIGHLIGHT" } ] } ], "denom": "Count_Person", - "title": "Annual Emissions of Non Biogenic Greenhouse Gases" + "description": "Annual emissions from all greenhouse gases measured in tonnes of CO\u2082 equivalents.", + "title": "Greenhouse Gas Emissions" }, { "columns": [ { "tiles": [ { - "statVarKey": [ - "Annual_Emissions_CarbonDioxide_NonBiogenic" + "barTileSpec": { + "maxPlaces": 15, + "maxVariables": 15, + "sort": "DESCENDING" + }, + "comparisonPlaces": [ + "country/USA" ], - "title": "Annual Emissions of Non Biogenic Carbon Dioxide in Fort Bend County", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Annual Emissions of Non Biogenic Carbon Dioxide in Fort Bend County", "statVarKey": [ - "Annual_Emissions_CarbonDioxide_NonBiogenic" + "Annual_Emissions_GreenhouseGas_Agriculture_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_ElectricityGeneration_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_FuelCombustionInBuildings_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_ForestryAndLandUse_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_Manufacturing_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_MineralExtraction_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_OilAndGas_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_Transportation_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_WasteManagement_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_CementProduction_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_SteelManufacturing_multiple_place_bar_block", + "Annual_Emissions_GreenhouseGas_ForestFire_multiple_place_bar_block" ], - "title": "Annual Emissions of Non Biogenic Carbon Dioxide in Fort Bend County", - "type": "HIGHLIGHT" - } - ] - } - ], - "denom": "Count_Person", - "title": "Annual Emissions of Non Biogenic Carbon Dioxide" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "Annual_Emissions_Hydrofluorocarbon_NonBiogenic", - "Annual_Emissions_NitrogenTrifluoride_NonBiogenic", - "Annual_Emissions_Perfluorocarbon_NonBiogenic", - "Annual_Emissions_SulfurHexafluoride_NonBiogenic" - ], - "title": "Flourinated Gas Emissions by Type in Fort Bend County", - "type": "LINE" + "title": "Greenhouse Gas Emissions by Source in United States (${date})", + "type": "BAR" } ] } ], "denom": "Count_Person", - "title": "Flourinated Gas Emissions by Type" + "title": "Greenhouse Gas Emissions by Source" }, { "columns": [ @@ -88,9 +76,9 @@ "tiles": [ { "statVarKey": [ - "Annual_Emissions_Methane_NonBiogenic" + "eia/INTL.4008-8-MMTCD.A" ], - "title": "Annual Emissions of Non Biogenic Methane in Fort Bend County", + "title": "CO2 Emissions, Annual in United States", "type": "LINE" } ] @@ -98,18 +86,18 @@ { "tiles": [ { - "description": "Annual Emissions of Non Biogenic Methane in Fort Bend County", + "description": "CO2 Emissions, Annual in United States", "statVarKey": [ - "Annual_Emissions_Methane_NonBiogenic" + "eia/INTL.4008-8-MMTCD.A" ], - "title": "Annual Emissions of Non Biogenic Methane in Fort Bend County", + "title": "CO2 Emissions, Annual in United States", "type": "HIGHLIGHT" } ] } ], "denom": "Count_Person", - "title": "Methane Emissions by Source" + "title": "CO2 Emissions, Annual" }, { "columns": [ @@ -117,9 +105,9 @@ "tiles": [ { "statVarKey": [ - "Annual_Emissions_NitrousOxide_NonBiogenic" + "Amount_Emissions_CarbonDioxide_PerCapita" ], - "title": "Annual Emissions of Non Biogenic Nitrous Oxide in Fort Bend County", + "title": "CO2 Emissions Per Capita in United States", "type": "LINE" } ] @@ -127,52 +115,17 @@ { "tiles": [ { - "description": "Annual Emissions of Non Biogenic Nitrous Oxide in Fort Bend County", + "description": "CO2 Emissions Per Capita in United States", "statVarKey": [ - "Annual_Emissions_NitrousOxide_NonBiogenic" + "Amount_Emissions_CarbonDioxide_PerCapita" ], - "title": "Annual Emissions of Non Biogenic Nitrous Oxide in Fort Bend County", + "title": "CO2 Emissions Per Capita in United States", "type": "HIGHLIGHT" } ] } ], - "denom": "Count_Person", - "title": "Nitrous Oxide Emissions by Source" - }, - { - "columns": [ - { - "tiles": [ - { - "barTileSpec": { - "maxPlaces": 15, - "maxVariables": 15, - "sort": "DESCENDING" - }, - "comparisonPlaces": [ - "geoId/48157" - ], - "statVarKey": [ - "Annual_Amount_Emissions_PM2.5_SCC_1_ExternalCombustion_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_2_InternalCombustionEngines_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_3_IndustrialProcesses_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_4_PetroleumAndSolventEvaporation_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_5_WasteDisposal_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_21_StationarySourceFuelCombustion_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_22_MobileSources_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_23_IndustrialProcesses_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_26_WasteDisposalTreatmentAndRecovery_multiple_place_bar_block", - "Annual_Amount_Emissions_PM2.5_SCC_28_MiscellaneousAreaSources_multiple_place_bar_block" - ], - "title": "PM 2.5 Emissions by Source in Fort Bend County (${date})", - "type": "BAR" - } - ] - } - ], - "denom": "Count_Person", - "title": "PM 2.5 Emissions by Source" + "title": "CO2 Emissions Per Capita" }, { "columns": [ @@ -185,29 +138,26 @@ "sort": "DESCENDING" }, "comparisonPlaces": [ - "geoId/48157" + "country/USA" ], "statVarKey": [ - "Annual_Amount_Emissions_SulfurDioxide_SCC_1_ExternalCombustion_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_2_InternalCombustionEngines_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_3_IndustrialProcesses_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_4_PetroleumAndSolventEvaporation_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_5_WasteDisposal_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_21_StationarySourceFuelCombustion_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_22_MobileSources_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_23_IndustrialProcesses_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_26_WasteDisposalTreatmentAndRecovery_multiple_place_bar_block", - "Annual_Amount_Emissions_SulfurDioxide_SCC_28_MiscellaneousAreaSources_multiple_place_bar_block", - "Annual_Emissions_SulfurHexafluoride_NonBiogenic_multiple_place_bar_block" + "Annual_Emissions_CarbonDioxide_Agriculture_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_FuelCombustionInBuildings_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_FossilFuelOperations_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_Manufacturing_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_MineralExtraction_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_Power_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_Transportation_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_WasteManagement_multiple_place_bar_block" ], - "title": "Sulfur Dioxide Emissions by Source in Fort Bend County (${date})", + "title": "CO2 Emissions by Source in United States (${date})", "type": "BAR" } ] } ], "denom": "Count_Person", - "title": "Sulfur Dioxide Emissions by Source" + "title": "CO2 Emissions by Source" }, { "columns": [ @@ -215,115 +165,49 @@ "tiles": [ { "statVarKey": [ - "Annual_Amount_Emissions_SCC_27_NaturalSources" + "Annual_Emissions_Methane_Agriculture", + "Annual_Emissions_Methane_FossilFuelOperations", + "Annual_Emissions_Methane_OpenBurningWaste", + "Annual_Emissions_Methane_WasteManagement" ], - "title": "Annual Emissions: Natural Sources in Fort Bend County", + "title": "Methane Emissions by Source in United States", "type": "LINE" } ] - }, - { - "tiles": [ - { - "description": "Annual Emissions: Natural Sources in Fort Bend County", - "statVarKey": [ - "Annual_Amount_Emissions_SCC_27_NaturalSources" - ], - "title": "Annual Emissions: Natural Sources in Fort Bend County", - "type": "HIGHLIGHT" - } - ] } ], "denom": "Count_Person", - "title": "Annual Emissions: Natural Sources" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "Annual_Amount_Emissions_SCC_28_MiscellaneousAreaSources" - ], - "title": "Annual Emissions: Misc in Fort Bend County", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Annual Emissions: Misc in Fort Bend County", - "statVarKey": [ - "Annual_Amount_Emissions_SCC_28_MiscellaneousAreaSources" - ], - "title": "Annual Emissions: Misc in Fort Bend County", - "type": "HIGHLIGHT" - } - ] - } - ], - "denom": "Count_Person", - "title": "Annual Emissions: Misc" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "Annual_Amount_Emissions_SCC_1_ExternalCombustion" - ], - "title": "Annual Emissions: External Combustion in Fort Bend County", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Annual Emissions: External Combustion in Fort Bend County", - "statVarKey": [ - "Annual_Amount_Emissions_SCC_1_ExternalCombustion" - ], - "title": "Annual Emissions: External Combustion in Fort Bend County", - "type": "HIGHLIGHT" - } - ] - } - ], - "denom": "Count_Person", - "title": "Annual Emissions: External Combustion" + "title": "Methane Emissions by Source" }, { "columns": [ { "tiles": [ { - "statVarKey": [ - "Annual_Amount_Emissions_SCC_2_InternalCombustionEngines" + "barTileSpec": { + "maxPlaces": 15, + "maxVariables": 15, + "sort": "DESCENDING" + }, + "comparisonPlaces": [ + "country/USA" ], - "title": "Annual Emissions: Internal Combustion Engines in Fort Bend County", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Annual Emissions: Internal Combustion Engines in Fort Bend County", "statVarKey": [ - "Annual_Amount_Emissions_SCC_2_InternalCombustionEngines" + "Annual_Emissions_NitrousOxide_Agriculture_multiple_place_bar_block", + "Annual_Emissions_NitrousOxide_FuelCombustionForResidentialCommercialOnsiteHeating_multiple_place_bar_block", + "Annual_Emissions_NitrousOxide_Manufacturing_multiple_place_bar_block", + "Annual_Emissions_NitrousOxide_Transportation_multiple_place_bar_block", + "Annual_Emissions_NitrousOxide_WasteManagement_multiple_place_bar_block", + "Annual_Emissions_NitrousOxide_WastewaterTreatmentAndDischarge_multiple_place_bar_block" ], - "title": "Annual Emissions: Internal Combustion Engines in Fort Bend County", - "type": "HIGHLIGHT" + "title": "Nitrous Oxide Emissions by Source in United States (${date})", + "type": "BAR" } ] } ], "denom": "Count_Person", - "title": "Annual Emissions: Internal Combustion Engines" + "title": "Nitrous Oxide Emissions by Source" }, { "columns": [ @@ -331,9 +215,9 @@ "tiles": [ { "statVarKey": [ - "Annual_Amount_Emissions_SCC_25_StorageAndTransport" + "Annual_Emissions_GreenhouseGas_FuelCombustionForRoadVehicles" ], - "title": "Annual Emissions: Storage and Transport in Fort Bend County", + "title": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas in United States", "type": "LINE" } ] @@ -341,262 +225,313 @@ { "tiles": [ { - "description": "Annual Emissions: Storage and Transport in Fort Bend County", + "description": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas in United States", "statVarKey": [ - "Annual_Amount_Emissions_SCC_25_StorageAndTransport" + "Annual_Emissions_GreenhouseGas_FuelCombustionForRoadVehicles" ], - "title": "Annual Emissions: Storage and Transport in Fort Bend County", + "title": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas in United States", "type": "HIGHLIGHT" } ] } ], "denom": "Count_Person", - "title": "Annual Emissions: Storage and Transport" + "title": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas" }, { "columns": [ { "tiles": [ { - "statVarKey": [ - "Annual_Amount_Emissions_SCC_23_IndustrialProcesses" + "barTileSpec": { + "maxPlaces": 15, + "maxVariables": 15, + "sort": "DESCENDING" + }, + "comparisonPlaces": [ + "country/USA" ], - "title": "Annual Emissions: Industrial Processes in Fort Bend County", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Annual Emissions: Industrial Processes in Fort Bend County", "statVarKey": [ - "Annual_Amount_Emissions_SCC_23_IndustrialProcesses" + "Annual_Emissions_GreenhouseGas_multiple_place_bar_block", + "Annual_Amount_Emissions_CarbonDioxide_multiple_place_bar_block", + "Annual_Amount_Emissions_CarbonMonoxide_multiple_place_bar_block", + "Annual_Amount_Emissions_OxidesOfNitrogen_multiple_place_bar_block", + "Annual_Amount_Emissions_OxidesOfSulfur_multiple_place_bar_block", + "Annual_Amount_Emissions_VolatileOrganicCompound_multiple_place_bar_block" ], - "title": "Annual Emissions: Industrial Processes in Fort Bend County", - "type": "HIGHLIGHT" + "title": "Greenhouse Gas Emissions and More in United States (${date})", + "type": "BAR" } ] } ], "denom": "Count_Person", - "title": "Annual Emissions: Industrial Processes" + "title": "Related: Greenhouse Gas Emissions and More" }, { "columns": [ { "tiles": [ { - "statVarKey": [ - "Annual_Amount_Emissions_SCC_3_IndustrialProcesses" + "barTileSpec": { + "maxPlaces": 15, + "maxVariables": 15, + "sort": "DESCENDING" + }, + "comparisonPlaces": [ + "country/USA" ], - "title": "Annual Emissions: Industrial Processes in Fort Bend County", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Annual Emissions: Industrial Processes in Fort Bend County", "statVarKey": [ - "Annual_Amount_Emissions_SCC_3_IndustrialProcesses" + "Annual_Emissions_GreenhouseGas_Transportation_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxideEquivalent100YearGlobalWarmingPotential_Transportation_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxideEquivalent20YearGlobalWarmingPotential_Transportation_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_Transportation_multiple_place_bar_block", + "Annual_Emissions_Methane_Transportation_multiple_place_bar_block", + "Annual_Emissions_NitrousOxide_Transportation_multiple_place_bar_block" ], - "title": "Annual Emissions: Industrial Processes in Fort Bend County", - "type": "HIGHLIGHT" + "title": "Greenhouse Gas Emissions From Transportation and More in United States (${date})", + "type": "BAR" } ] } ], "denom": "Count_Person", - "title": "Annual Emissions: Industrial Processes" + "title": "Related: Greenhouse Gas Emissions From Transportation and More" }, { "columns": [ { "tiles": [ { - "statVarKey": [ - "Annual_Amount_Emissions_SCC_21_StationarySourceFuelCombustion" + "barTileSpec": { + "maxPlaces": 15, + "maxVariables": 15, + "sort": "DESCENDING" + }, + "comparisonPlaces": [ + "country/USA" ], - "title": "Annual Emissions: Stationary Source Fuel Combustion in Fort Bend County", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Annual Emissions: Stationary Source Fuel Combustion in Fort Bend County", "statVarKey": [ - "Annual_Amount_Emissions_SCC_21_StationarySourceFuelCombustion" + "Annual_Emissions_GreenhouseGas_FuelCombustionForRoadVehicles_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxideEquivalent100YearGlobalWarmingPotential_FuelCombustionForRoadVehicles_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxideEquivalent20YearGlobalWarmingPotential_FuelCombustionForRoadVehicles_multiple_place_bar_block", + "Annual_Emissions_CarbonDioxide_FuelCombustionForRoadVehicles_multiple_place_bar_block", + "Annual_Emissions_Methane_FuelCombustionForRoadVehicles_multiple_place_bar_block", + "Annual_Emissions_NitrousOxide_FuelCombustionForRoadVehicles_multiple_place_bar_block" ], - "title": "Annual Emissions: Stationary Source Fuel Combustion in Fort Bend County", - "type": "HIGHLIGHT" + "title": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas and More in United States (${date})", + "type": "BAR" } ] } ], "denom": "Count_Person", - "title": "Annual Emissions: Stationary Source Fuel Combustion" + "title": "Related: Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas and More" } ], "statVarSpec": { - "Annual_Amount_Emissions_PM2.5_SCC_1_ExternalCombustion_multiple_place_bar_block": { - "name": "Annual Amount Emissions PM2.5, ExternalCombustion (1)", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_1_ExternalCombustion" + "Amount_Emissions_CarbonDioxide_PerCapita": { + "name": "CO2 Emissions Per Capita", + "statVar": "Amount_Emissions_CarbonDioxide_PerCapita" + }, + "Annual_Amount_Emissions_CarbonDioxide_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Carbon Dioxide", + "statVar": "Annual_Amount_Emissions_CarbonDioxide" + }, + "Annual_Amount_Emissions_CarbonMonoxide_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Carbon Monoxide", + "statVar": "Annual_Amount_Emissions_CarbonMonoxide" + }, + "Annual_Amount_Emissions_OxidesOfNitrogen_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Oxides of Nitrogen", + "statVar": "Annual_Amount_Emissions_OxidesOfNitrogen" + }, + "Annual_Amount_Emissions_OxidesOfSulfur_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Oxides of Sulfur", + "statVar": "Annual_Amount_Emissions_OxidesOfSulfur" + }, + "Annual_Amount_Emissions_VolatileOrganicCompound_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Volatile Organic Compound", + "statVar": "Annual_Amount_Emissions_VolatileOrganicCompound" + }, + "Annual_Emissions_CarbonDioxideEquivalent100YearGlobalWarmingPotential_FuelCombustionForRoadVehicles_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Carbon Dioxide Equivalent 100 Year Global Warming Potential", + "statVar": "Annual_Emissions_CarbonDioxideEquivalent100YearGlobalWarmingPotential_FuelCombustionForRoadVehicles" + }, + "Annual_Emissions_CarbonDioxideEquivalent100YearGlobalWarmingPotential_Transportation_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Transportation, Carbon Dioxide Equivalent 100 Year Global Warming Potential", + "statVar": "Annual_Emissions_CarbonDioxideEquivalent100YearGlobalWarmingPotential_Transportation" + }, + "Annual_Emissions_CarbonDioxideEquivalent20YearGlobalWarmingPotential_FuelCombustionForRoadVehicles_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Carbon Dioxide Equivalent 20 Year Global Warming Potential", + "statVar": "Annual_Emissions_CarbonDioxideEquivalent20YearGlobalWarmingPotential_FuelCombustionForRoadVehicles" + }, + "Annual_Emissions_CarbonDioxideEquivalent20YearGlobalWarmingPotential_Transportation_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Transportation, Carbon Dioxide Equivalent 20 Year Global Warming Potential", + "statVar": "Annual_Emissions_CarbonDioxideEquivalent20YearGlobalWarmingPotential_Transportation" + }, + "Annual_Emissions_CarbonDioxide_Agriculture_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Agriculture", + "statVar": "Annual_Emissions_CarbonDioxide_Agriculture" + }, + "Annual_Emissions_CarbonDioxide_FossilFuelOperations_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Fossil Fuel Operations", + "statVar": "Annual_Emissions_CarbonDioxide_FossilFuelOperations" + }, + "Annual_Emissions_CarbonDioxide_FuelCombustionForRoadVehicles_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Carbon Dioxide", + "statVar": "Annual_Emissions_CarbonDioxide_FuelCombustionForRoadVehicles" }, - "Annual_Amount_Emissions_PM2.5_SCC_21_StationarySourceFuelCombustion_multiple_place_bar_block": { - "name": "Annual Amount Emissions PM2.5, StationarySourceFuelCombustion (21)", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_21_StationarySourceFuelCombustion" + "Annual_Emissions_CarbonDioxide_FuelCombustionInBuildings_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Fuel Combustion in Buildings", + "statVar": "Annual_Emissions_CarbonDioxide_FuelCombustionInBuildings" }, - "Annual_Amount_Emissions_PM2.5_SCC_22_MobileSources_multiple_place_bar_block": { - "name": "Annual Amount Emissions PM2.5, MobileSources (22)", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_22_MobileSources" + "Annual_Emissions_CarbonDioxide_Manufacturing_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Manufacturing", + "statVar": "Annual_Emissions_CarbonDioxide_Manufacturing" }, - "Annual_Amount_Emissions_PM2.5_SCC_23_IndustrialProcesses_multiple_place_bar_block": { - "name": "Annual Amount Emissions PM2.5, IndustrialProcesses (23)", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_23_IndustrialProcesses" + "Annual_Emissions_CarbonDioxide_MineralExtraction_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Mineral Extraction", + "statVar": "Annual_Emissions_CarbonDioxide_MineralExtraction" }, - "Annual_Amount_Emissions_PM2.5_SCC_26_WasteDisposalTreatmentAndRecovery_multiple_place_bar_block": { - "name": "Annual Amount Emissions PM2.5, WasteDisposalTreatmentAndRecovery (26)", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_26_WasteDisposalTreatmentAndRecovery" + "Annual_Emissions_CarbonDioxide_Power_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Power Sector", + "statVar": "Annual_Emissions_CarbonDioxide_Power" }, - "Annual_Amount_Emissions_PM2.5_SCC_28_MiscellaneousAreaSources_multiple_place_bar_block": { - "name": "Annual Emissions: PM 2.5, Misc Sources", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_28_MiscellaneousAreaSources" + "Annual_Emissions_CarbonDioxide_Transportation_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Transportation", + "statVar": "Annual_Emissions_CarbonDioxide_Transportation" }, - "Annual_Amount_Emissions_PM2.5_SCC_2_InternalCombustionEngines_multiple_place_bar_block": { - "name": "Annual Emissions: PM 2.5, Internal Combustion Engine", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_2_InternalCombustionEngines" + "Annual_Emissions_CarbonDioxide_WasteManagement_multiple_place_bar_block": { + "name": "CO\u2082 Emissions from Waste Management", + "statVar": "Annual_Emissions_CarbonDioxide_WasteManagement" }, - "Annual_Amount_Emissions_PM2.5_SCC_3_IndustrialProcesses_multiple_place_bar_block": { - "name": "Annual Emissions: PM 2.5, Industrial Processes", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_3_IndustrialProcesses" + "Annual_Emissions_GreenhouseGas": { + "name": "Greenhouse Gas Emissions", + "statVar": "Annual_Emissions_GreenhouseGas" }, - "Annual_Amount_Emissions_PM2.5_SCC_4_PetroleumAndSolventEvaporation_multiple_place_bar_block": { - "name": "Annual Emissions: PM 2.5, Petroleum & Solvent Evaporation", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_4_PetroleumAndSolventEvaporation" + "Annual_Emissions_GreenhouseGas_Agriculture_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Agriculture", + "statVar": "Annual_Emissions_GreenhouseGas_Agriculture" }, - "Annual_Amount_Emissions_PM2.5_SCC_5_WasteDisposal_multiple_place_bar_block": { - "name": "Annual Emissions: PM 2.5, Waste Disposal", - "statVar": "Annual_Amount_Emissions_PM2.5_SCC_5_WasteDisposal" + "Annual_Emissions_GreenhouseGas_CementProduction_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Cement Production, Greenhouse Gas", + "statVar": "Annual_Emissions_GreenhouseGas_CementProduction" }, - "Annual_Amount_Emissions_SCC_1_ExternalCombustion": { - "name": "Annual Emissions: External Combustion", - "statVar": "Annual_Amount_Emissions_SCC_1_ExternalCombustion" + "Annual_Emissions_GreenhouseGas_ElectricityGeneration_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Electricity Generation", + "statVar": "Annual_Emissions_GreenhouseGas_ElectricityGeneration" }, - "Annual_Amount_Emissions_SCC_21_StationarySourceFuelCombustion": { - "name": "Annual Emissions: Stationary Source Fuel Combustion", - "statVar": "Annual_Amount_Emissions_SCC_21_StationarySourceFuelCombustion" + "Annual_Emissions_GreenhouseGas_ForestFire_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Forest Fire, Greenhouse Gas", + "statVar": "Annual_Emissions_GreenhouseGas_ForestFire" }, - "Annual_Amount_Emissions_SCC_23_IndustrialProcesses": { - "name": "Annual Emissions: Industrial Processes", - "statVar": "Annual_Amount_Emissions_SCC_23_IndustrialProcesses" + "Annual_Emissions_GreenhouseGas_ForestryAndLandUse_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Forestry and Land Use", + "statVar": "Annual_Emissions_GreenhouseGas_ForestryAndLandUse" }, - "Annual_Amount_Emissions_SCC_25_StorageAndTransport": { - "name": "Annual Emissions: Storage and Transport", - "statVar": "Annual_Amount_Emissions_SCC_25_StorageAndTransport" + "Annual_Emissions_GreenhouseGas_FuelCombustionForRoadVehicles": { + "name": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas", + "statVar": "Annual_Emissions_GreenhouseGas_FuelCombustionForRoadVehicles" }, - "Annual_Amount_Emissions_SCC_27_NaturalSources": { - "name": "Annual Emissions: Natural Sources", - "statVar": "Annual_Amount_Emissions_SCC_27_NaturalSources" + "Annual_Emissions_GreenhouseGas_FuelCombustionForRoadVehicles_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Greenhouse Gas", + "statVar": "Annual_Emissions_GreenhouseGas_FuelCombustionForRoadVehicles" }, - "Annual_Amount_Emissions_SCC_28_MiscellaneousAreaSources": { - "name": "Annual Emissions: Misc", - "statVar": "Annual_Amount_Emissions_SCC_28_MiscellaneousAreaSources" + "Annual_Emissions_GreenhouseGas_FuelCombustionInBuildings_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Fuel Combustion in Buildings", + "statVar": "Annual_Emissions_GreenhouseGas_FuelCombustionInBuildings" }, - "Annual_Amount_Emissions_SCC_2_InternalCombustionEngines": { - "name": "Annual Emissions: Internal Combustion Engines", - "statVar": "Annual_Amount_Emissions_SCC_2_InternalCombustionEngines" + "Annual_Emissions_GreenhouseGas_Manufacturing_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Manufacturing", + "statVar": "Annual_Emissions_GreenhouseGas_Manufacturing" }, - "Annual_Amount_Emissions_SCC_3_IndustrialProcesses": { - "name": "Annual Emissions: Industrial Processes", - "statVar": "Annual_Amount_Emissions_SCC_3_IndustrialProcesses" + "Annual_Emissions_GreenhouseGas_MineralExtraction_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Mineral Extraction", + "statVar": "Annual_Emissions_GreenhouseGas_MineralExtraction" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_1_ExternalCombustion_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, External Combustion", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_1_ExternalCombustion" + "Annual_Emissions_GreenhouseGas_OilAndGas_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Oil And Gas, Greenhouse Gas", + "statVar": "Annual_Emissions_GreenhouseGas_OilAndGas" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_21_StationarySourceFuelCombustion_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Stationary Source Fuel Combustion", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_21_StationarySourceFuelCombustion" + "Annual_Emissions_GreenhouseGas_SteelManufacturing_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Steel Manufacturing, Greenhouse Gas", + "statVar": "Annual_Emissions_GreenhouseGas_SteelManufacturing" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_22_MobileSources_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Mobile Sources", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_22_MobileSources" + "Annual_Emissions_GreenhouseGas_Transportation_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Transportation", + "statVar": "Annual_Emissions_GreenhouseGas_Transportation" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_23_IndustrialProcesses_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Industrial Processes", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_23_IndustrialProcesses" + "Annual_Emissions_GreenhouseGas_WasteManagement_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions from Waste Management", + "statVar": "Annual_Emissions_GreenhouseGas_WasteManagement" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_26_WasteDisposalTreatmentAndRecovery_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Waste Treatment & Recovery", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_26_WasteDisposalTreatmentAndRecovery" + "Annual_Emissions_GreenhouseGas_multiple_place_bar_block": { + "name": "Greenhouse Gas Emissions", + "statVar": "Annual_Emissions_GreenhouseGas" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_28_MiscellaneousAreaSources_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Misc Sources", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_28_MiscellaneousAreaSources" + "Annual_Emissions_Methane_Agriculture": { + "name": "Annual Amount of Emissions: Agriculture, Methane", + "statVar": "Annual_Emissions_Methane_Agriculture" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_2_InternalCombustionEngines_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Internal Combustion Engine", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_2_InternalCombustionEngines" + "Annual_Emissions_Methane_FossilFuelOperations": { + "name": "Annual Amount of Emissions: Fossil Fuel Operations, Methane", + "statVar": "Annual_Emissions_Methane_FossilFuelOperations" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_3_IndustrialProcesses_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Industrial Processes", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_3_IndustrialProcesses" + "Annual_Emissions_Methane_FuelCombustionForRoadVehicles_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Methane", + "statVar": "Annual_Emissions_Methane_FuelCombustionForRoadVehicles" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_4_PetroleumAndSolventEvaporation_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Petroleum & Solvent Evaporation", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_4_PetroleumAndSolventEvaporation" + "Annual_Emissions_Methane_OpenBurningWaste": { + "name": "Annual Amount of Emissions: Open Burning Waste, Methane", + "statVar": "Annual_Emissions_Methane_OpenBurningWaste" }, - "Annual_Amount_Emissions_SulfurDioxide_SCC_5_WasteDisposal_multiple_place_bar_block": { - "name": "Annual Emissions: Sulfur Dioxide, Waste Disposal", - "statVar": "Annual_Amount_Emissions_SulfurDioxide_SCC_5_WasteDisposal" + "Annual_Emissions_Methane_Transportation_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Transportation, Methane", + "statVar": "Annual_Emissions_Methane_Transportation" }, - "Annual_Emissions_CarbonDioxide_NonBiogenic": { - "name": "Annual Emissions of Non Biogenic Carbon Dioxide", - "statVar": "Annual_Emissions_CarbonDioxide_NonBiogenic" + "Annual_Emissions_Methane_WasteManagement": { + "name": "Annual Amount of Emissions: Waste Management, Methane", + "statVar": "Annual_Emissions_Methane_WasteManagement" }, - "Annual_Emissions_GreenhouseGas_NonBiogenic": { - "name": "Annual Emissions of Non Biogenic Greenhouse Gases", - "statVar": "Annual_Emissions_GreenhouseGas_NonBiogenic" + "Annual_Emissions_NitrousOxide_Agriculture_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Agriculture, Nitrous Oxide", + "statVar": "Annual_Emissions_NitrousOxide_Agriculture" }, - "Annual_Emissions_Hydrofluorocarbon_NonBiogenic": { - "name": "Annual Amount of Emissions: Non Biogenic Emission Source, Hydrofluorocarbon", - "statVar": "Annual_Emissions_Hydrofluorocarbon_NonBiogenic" + "Annual_Emissions_NitrousOxide_FuelCombustionForResidentialCommercialOnsiteHeating_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Fuel Combustion for Residential Commercial Onsite Heating, Nitrous Oxide", + "statVar": "Annual_Emissions_NitrousOxide_FuelCombustionForResidentialCommercialOnsiteHeating" }, - "Annual_Emissions_Methane_NonBiogenic": { - "name": "Annual Emissions of Non Biogenic Methane", - "statVar": "Annual_Emissions_Methane_NonBiogenic" + "Annual_Emissions_NitrousOxide_FuelCombustionForRoadVehicles_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Fuel Combustion for Road Vehicles, Nitrous Oxide", + "statVar": "Annual_Emissions_NitrousOxide_FuelCombustionForRoadVehicles" }, - "Annual_Emissions_NitrogenTrifluoride_NonBiogenic": { - "name": "Annual Amount of Emissions: Non Biogenic Emission Source, Nitrogen Trifluoride", - "statVar": "Annual_Emissions_NitrogenTrifluoride_NonBiogenic" + "Annual_Emissions_NitrousOxide_Manufacturing_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Manufacturing, Nitrous Oxide", + "statVar": "Annual_Emissions_NitrousOxide_Manufacturing" }, - "Annual_Emissions_NitrousOxide_NonBiogenic": { - "name": "Annual Emissions of Non Biogenic Nitrous Oxide", - "statVar": "Annual_Emissions_NitrousOxide_NonBiogenic" + "Annual_Emissions_NitrousOxide_Transportation_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Transportation, Nitrous Oxide", + "statVar": "Annual_Emissions_NitrousOxide_Transportation" }, - "Annual_Emissions_Perfluorocarbon_NonBiogenic": { - "name": "Annual Amount of Emissions: Non Biogenic Emission Source, Perfluorocarbon", - "statVar": "Annual_Emissions_Perfluorocarbon_NonBiogenic" + "Annual_Emissions_NitrousOxide_WasteManagement_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Waste Management, Nitrous Oxide", + "statVar": "Annual_Emissions_NitrousOxide_WasteManagement" }, - "Annual_Emissions_SulfurHexafluoride_NonBiogenic": { - "name": "Annual Amount of Emissions: Non Biogenic Emission Source, Sulfur Hexafluoride", - "statVar": "Annual_Emissions_SulfurHexafluoride_NonBiogenic" + "Annual_Emissions_NitrousOxide_WastewaterTreatmentAndDischarge_multiple_place_bar_block": { + "name": "Annual Amount of Emissions: Wastewater Treatment And Discharge, Nitrous Oxide", + "statVar": "Annual_Emissions_NitrousOxide_WastewaterTreatmentAndDischarge" }, - "Annual_Emissions_SulfurHexafluoride_NonBiogenic_multiple_place_bar_block": { - "name": "Annual Amount of Emissions: Non Biogenic Emission Source, Sulfur Hexafluoride", - "statVar": "Annual_Emissions_SulfurHexafluoride_NonBiogenic" + "eia/INTL.4008-8-MMTCD.A": { + "name": "CO2 emissions, Annual", + "statVar": "eia/INTL.4008-8-MMTCD.A" } } } ], "metadata": { "placeDcid": [ - "geoId/48157" + "country/USA" ] } }, @@ -605,18 +540,18 @@ "entities": [], "pastSourceContext": "", "place": { - "dcid": "geoId/48157", - "name": "Fort Bend County", - "place_type": "County" + "dcid": "country/USA", + "name": "United States", + "place_type": "Country" }, "placeFallback": { "newPlace": { "country": null, - "dcid": "geoId/48157", - "name": "Fort Bend County", - "place_type": "County" + "dcid": "country/USA", + "name": "United States", + "place_type": "Country" }, - "newStr": "Fort Bend County", + "newStr": "United States", "origPlace": { "country": "country/USA", "dcid": "geoId/4835000", @@ -628,9 +563,9 @@ "placeSource": "CURRENT_QUERY", "places": [ { - "dcid": "geoId/48157", - "name": "Fort Bend County", - "place_type": "County" + "dcid": "country/USA", + "name": "United States", + "place_type": "Country" } ], "relatedThings": { @@ -683,6 +618,6 @@ }, "svSource": "CURRENT_QUERY", "userMessages": [ - "Sorry, there were no relevant statistics for Houston. See results for Fort Bend County." + "Sorry, there were no relevant statistics for Houston. See results for United States." ] } \ No newline at end of file diff --git a/server/integration_tests/test_data/e2e_edge_cases/immunizationvs.debtintheworld/chart_config.json b/server/integration_tests/test_data/e2e_edge_cases/immunizationvs.debtintheworld/chart_config.json index fa20eb0899..f21c3db394 100644 --- a/server/integration_tests/test_data/e2e_edge_cases/immunizationvs.debtintheworld/chart_config.json +++ b/server/integration_tests/test_data/e2e_edge_cases/immunizationvs.debtintheworld/chart_config.json @@ -4,57 +4,6 @@ "categories": [ { "blocks": [ - { - "columns": [ - { - "tiles": [ - { - "scatterTileSpec": { - "highlightTopRight": true - }, - "statVarKey": [ - "WHO/WHS4_128_scatter", - "sdg/DT_DOD_DECT_GN_ZS_scatter" - ], - "title": "Neonates Protected at Birth Against Neonatal Tetanus (Pab) (%) (${yDate}) Vs. External Debt Stocks as a Proportion of GNI (${xDate}) in the World", - "type": "SCATTER" - } - ] - } - ], - "title": "Neonates Protected At Birth Against Neonatal Tetanus (Pab) (%) vs. External debt stocks as a proportion of GNI" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/WHS4_128" - ], - "title": "Neonates Protected at Birth Against Neonatal Tetanus (Pab) (%) in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/WHS4_128" - ], - "title": "Neonates Protected at Birth Against Neonatal Tetanus (Pab) (%) in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Neonates Protected at Birth Against Neonatal Tetanus (Pab) (%) in the World" - }, { "columns": [ { @@ -86,206 +35,12 @@ ], "footnote": "Includes data from the following sources: world bank, international debt statistics.", "title": "External Debt Stocks as a Proportion of GNI in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "scatterTileSpec": { - "highlightTopRight": true - }, - "statVarKey": [ - "WHO/WHS4_117_scatter", - "sdg/DT_DOD_DECT_GN_ZS_scatter" - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) (${yDate}) Vs. External Debt Stocks as a Proportion of GNI (${xDate}) in the World", - "type": "SCATTER" - } - ] - } - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) vs. External debt stocks as a proportion of GNI" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/WHS4_117" - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/WHS4_117" - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "scatterTileSpec": { - "highlightTopRight": true - }, - "statVarKey": [ - "WHO/bcgv_Female_scatter", - "sdg/DT_DOD_DECT_GN_ZS_scatter" - ], - "title": "% Bcg Immunization, Female One-Year-Old (${yDate}) Vs. External Debt Stocks as a Proportion of GNI (${xDate}) in the World", - "type": "SCATTER" - } - ] - } - ], - "title": "% Bcg Immunization, Female One-Year-Old vs. External debt stocks as a proportion of GNI" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/bcgv_Female" - ], - "title": "% Bcg Immunization, Female One-Year-Old in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/bcgv_Female" - ], - "title": "% Bcg Immunization, Female One-Year-Old in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "% Bcg Immunization, Female One-Year-Old in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "scatterTileSpec": { - "highlightTopRight": true - }, - "statVarKey": [ - "WHO/dptv_Female_scatter", - "sdg/DT_DOD_DECT_GN_ZS_scatter" - ], - "title": "% Dtp3 Immunization, Female One-Year-Olds (${yDate}) Vs. External Debt Stocks as a Proportion of GNI (${xDate}) in the World", - "type": "SCATTER" - } - ] - } - ], - "title": "% Dtp3 Immunization, Female One-Year-Olds vs. External debt stocks as a proportion of GNI" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/dptv_Female" - ], - "title": "% Dtp3 Immunization, Female One-Year-Olds in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/dptv_Female" - ], - "title": "% Dtp3 Immunization, Female One-Year-Olds in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "% Dtp3 Immunization, Female One-Year-Olds in the World" } ], "statVarSpec": { - "WHO/WHS4_117": { - "name": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%)", - "statVar": "WHO/WHS4_117" - }, - "WHO/WHS4_117_scatter": { - "name": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%)", - "noPerCapita": true, - "statVar": "WHO/WHS4_117" - }, - "WHO/WHS4_128": { - "name": "Neonates Protected At Birth Against Neonatal Tetanus (Pab) (%)", - "statVar": "WHO/WHS4_128" - }, - "WHO/WHS4_128_scatter": { - "name": "Neonates Protected At Birth Against Neonatal Tetanus (Pab) (%)", - "noPerCapita": true, - "statVar": "WHO/WHS4_128" - }, - "WHO/bcgv_Female": { - "name": "% Bcg Immunization, Female One-Year-Old", - "statVar": "WHO/bcgv_Female" - }, - "WHO/bcgv_Female_scatter": { - "name": "% Bcg Immunization, Female One-Year-Old", - "noPerCapita": true, - "statVar": "WHO/bcgv_Female" - }, - "WHO/dptv_Female": { - "name": "% Dtp3 Immunization, Female One-Year-Olds", - "statVar": "WHO/dptv_Female" - }, - "WHO/dptv_Female_scatter": { - "name": "% Dtp3 Immunization, Female One-Year-Olds", - "noPerCapita": true, - "statVar": "WHO/dptv_Female" - }, "sdg/DT_DOD_DECT_GN_ZS": { "name": "External debt stocks as a proportion of GNI", "statVar": "sdg/DT_DOD_DECT_GN_ZS" - }, - "sdg/DT_DOD_DECT_GN_ZS_scatter": { - "name": "External debt stocks as a proportion of GNI", - "noPerCapita": true, - "statVar": "sdg/DT_DOD_DECT_GN_ZS" } } } @@ -675,13 +430,6 @@ "childTopics": [], "exploreMore": {}, "mainTopics": [ - { - "dcid": "dc/topic/WHOImmunization", - "name": "Immunization", - "types": [ - "Topic" - ] - }, { "dcid": "dc/topic/Debt", "name": "Debt", @@ -692,13 +440,6 @@ ], "parentPlaces": [], "parentTopics": [ - { - "dcid": "dc/topic/GlobalHealth", - "name": "Global Health", - "types": [ - "Topic" - ] - }, { "dcid": "dc/topic/GlobalEconomicActivity", "name": "Global Economic Activity", @@ -709,13 +450,6 @@ ], "peerPlaces": [], "peerTopics": [ - { - "dcid": "dc/topic/WHOMortality", - "name": "Mortality", - "types": [ - "Topic" - ] - }, { "dcid": "dc/topic/GDP", "name": "GDP", diff --git a/server/integration_tests/test_data/e2e_edge_cases2/povertyvs.unemploymentrateindistrictsoftamilnadu/chart_config.json b/server/integration_tests/test_data/e2e_edge_cases2/povertyvs.unemploymentrateindistrictsoftamilnadu/chart_config.json index 5ba0a15e4d..2bb5e6b5f5 100644 --- a/server/integration_tests/test_data/e2e_edge_cases2/povertyvs.unemploymentrateindistrictsoftamilnadu/chart_config.json +++ b/server/integration_tests/test_data/e2e_edge_cases2/povertyvs.unemploymentrateindistrictsoftamilnadu/chart_config.json @@ -33,34 +33,6 @@ "denom": "Count_Person", "title": "Population Below Poverty Line" }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "UnemploymentRate_Person" - ], - "title": "Unemployment Rate in Tamil Nadu", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Unemployment Rate in Tamil Nadu", - "statVarKey": [ - "UnemploymentRate_Person" - ], - "title": "Unemployment Rate in Tamil Nadu", - "type": "HIGHLIGHT" - } - ] - } - ], - "title": "Unemployment Rate" - }, { "columns": [ { @@ -98,10 +70,6 @@ "Count_Person_BelowPovertyLevelInThePast12Months_AsFractionOf_Count_Person": { "name": "Population Below poverty line (Per Capita)", "statVar": "Count_Person_BelowPovertyLevelInThePast12Months_AsFractionOf_Count_Person" - }, - "UnemploymentRate_Person": { - "name": "Unemployment Rate", - "statVar": "UnemploymentRate_Person" } } } @@ -157,7 +125,14 @@ ] } ], - "exploreMore": {}, + "exploreMore": { + "Count_Person_BelowPovertyLevelInThePast12Months": { + "placeOfResidenceClassification": [ + "Count_Person_Rural_BelowPovertyLevelInThePast12Months", + "Count_Person_Urban_BelowPovertyLevelInThePast12Months" + ] + } + }, "mainTopics": [ { "dcid": "dc/topic/Poverty", @@ -179,13 +154,6 @@ ], "peerPlaces": [], "peerTopics": [ - { - "dcid": "dc/topic/Employment", - "name": "Employment", - "types": [ - "Topic" - ] - }, { "dcid": "dc/topic/GlobalEconomicActivity", "name": "Global Economic Activity", diff --git a/server/integration_tests/test_data/e2e_fallbacks/lifeexpectancyinuscounties/chart_config.json b/server/integration_tests/test_data/e2e_fallbacks/lifeexpectancyinuscounties/chart_config.json index 48a0c6de51..fa4ceb5de2 100644 --- a/server/integration_tests/test_data/e2e_fallbacks/lifeexpectancyinuscounties/chart_config.json +++ b/server/integration_tests/test_data/e2e_fallbacks/lifeexpectancyinuscounties/chart_config.json @@ -587,23 +587,6 @@ ], "title": "Male Mortality Rate (Age Adjusted)" }, - { - "columns": [ - { - "tiles": [ - { - "description": "Diabetes Mellitus, Per 100,000 in United States", - "statVarKey": [ - "WHO/SA_0000001421" - ], - "title": "Diabetes Mellitus, Per 100,000 in United States", - "type": "HIGHLIGHT" - } - ] - } - ], - "title": "Diabetes Mellitus, Per 100,000" - }, { "columns": [ { @@ -660,6 +643,34 @@ } ], "title": "Count of Mortality Event: 1 Years or Less (As Fraction of Count Birth Event)" + }, + { + "columns": [ + { + "tiles": [ + { + "statVarKey": [ + "Count_Death_Female_AgeAdjusted_AsAFractionOf_Count_Person_Female" + ], + "title": "Female Mortality Rate (Age Adjusted) in United States", + "type": "LINE" + } + ] + }, + { + "tiles": [ + { + "description": "Female Mortality Rate (Age Adjusted) in United States", + "statVarKey": [ + "Count_Death_Female_AgeAdjusted_AsAFractionOf_Count_Person_Female" + ], + "title": "Female Mortality Rate (Age Adjusted) in United States", + "type": "HIGHLIGHT" + } + ] + } + ], + "title": "Female Mortality Rate (Age Adjusted)" } ], "statVarSpec": { @@ -743,6 +754,10 @@ "name": "Count of Mortality Event: Female", "statVar": "Count_Death_Female" }, + "Count_Death_Female_AgeAdjusted_AsAFractionOf_Count_Person_Female": { + "name": "Female Mortality Rate (Age Adjusted)", + "statVar": "Count_Death_Female_AgeAdjusted_AsAFractionOf_Count_Person_Female" + }, "Count_Death_IntentionalSelfHarm_AsFractionOf_Count_Person_multiple_place_bar_block": { "name": "% of Suicide Events", "statVar": "Count_Death_IntentionalSelfHarm_AsFractionOf_Count_Person" @@ -823,10 +838,6 @@ "name": "Average interval in months since last live birth", "statVar": "Mean_IntervalSinceLastBirth_BirthEvent_LiveBirth" }, - "WHO/SA_0000001421": { - "name": "Diabetes Mellitus, Per 100,000", - "statVar": "WHO/SA_0000001421" - }, "sdg/SH_DYN_IMRT.AGE--Y0__SEX--F": { "name": "Infant mortality rate", "statVar": "sdg/SH_DYN_IMRT.AGE--Y0__SEX--F" diff --git a/server/integration_tests/test_data/e2e_india_demo/howdoesliteracyratecomparetopovertyinindia/chart_config.json b/server/integration_tests/test_data/e2e_india_demo/howdoesliteracyratecomparetopovertyinindia/chart_config.json index 84842c8ba0..2b904cee2c 100644 --- a/server/integration_tests/test_data/e2e_india_demo/howdoesliteracyratecomparetopovertyinindia/chart_config.json +++ b/server/integration_tests/test_data/e2e_india_demo/howdoesliteracyratecomparetopovertyinindia/chart_config.json @@ -718,13 +718,6 @@ } ], "peerTopics": [ - { - "dcid": "dc/topic/Employment", - "name": "Employment", - "types": [ - "Topic" - ] - }, { "dcid": "dc/topic/GlobalEconomicActivity", "name": "Global Economic Activity", diff --git a/server/integration_tests/test_data/e2e_india_demo/howdoestheliteracyratecompare/chart_config.json b/server/integration_tests/test_data/e2e_india_demo/howdoestheliteracyratecompare/chart_config.json index 75580bd31e..3d3a7fd954 100644 --- a/server/integration_tests/test_data/e2e_india_demo/howdoestheliteracyratecompare/chart_config.json +++ b/server/integration_tests/test_data/e2e_india_demo/howdoestheliteracyratecompare/chart_config.json @@ -72,39 +72,6 @@ "denom": "Count_Person", "title": "Population: Illiterate" }, - { - "columns": [ - { - "tiles": [ - { - "barTileSpec": { - "maxPlaces": 15, - "maxVariables": 15, - "sort": "DESCENDING" - }, - "comparisonPlaces": [ - "wikidataId/Q1165", - "wikidataId/Q1184", - "wikidataId/Q1168", - "wikidataId/Q1498", - "wikidataId/Q1193", - "wikidataId/Q1188", - "wikidataId/Q1195", - "wikidataId/Q1164", - "wikidataId/Q1437", - "wikidataId/Q22048" - ], - "statVarKey": [ - "Count_Person_Illiterate_AsAFractionOf_Count_Person_multiple_place_bar_block" - ], - "title": "Population: Illiterate (Per Capita) (${date})", - "type": "BAR" - } - ] - } - ], - "title": "Population: Illiterate (Per Capita)" - }, { "columns": [ { @@ -546,9 +513,47 @@ ], "denom": "Count_Person", "title": "Population: Houseless, Literate, Rural" + }, + { + "columns": [ + { + "tiles": [ + { + "barTileSpec": { + "maxPlaces": 15, + "maxVariables": 15, + "sort": "DESCENDING" + }, + "comparisonPlaces": [ + "wikidataId/Q1165", + "wikidataId/Q1184", + "wikidataId/Q1168", + "wikidataId/Q1498", + "wikidataId/Q1193", + "wikidataId/Q1188", + "wikidataId/Q1195", + "wikidataId/Q1164", + "wikidataId/Q1437", + "wikidataId/Q22048" + ], + "statVarKey": [ + "Count_Person_Houseless_Illiterate_Rural_multiple_place_bar_block" + ], + "title": "Population: Houseless, Illiterate, Rural (${date})", + "type": "BAR" + } + ] + } + ], + "denom": "Count_Person", + "title": "Population: Houseless, Illiterate, Rural" } ], "statVarSpec": { + "Count_Person_Houseless_Illiterate_Rural_multiple_place_bar_block": { + "name": "Population: Houseless, Illiterate, Rural", + "statVar": "Count_Person_Houseless_Illiterate_Rural" + }, "Count_Person_Houseless_Illiterate_Urban_multiple_place_bar_block": { "name": "Population: Houseless, Illiterate, Urban", "statVar": "Count_Person_Houseless_Illiterate_Urban" @@ -569,10 +574,6 @@ "name": "Population: Houseless, Literate", "statVar": "Count_Person_Houseless_Literate" }, - "Count_Person_Illiterate_AsAFractionOf_Count_Person_multiple_place_bar_block": { - "name": "Population: Illiterate (Per Capita)", - "statVar": "Count_Person_Illiterate_AsAFractionOf_Count_Person" - }, "Count_Person_Illiterate_Female_multiple_place_bar_block": { "name": "Population: Female, Illiterate", "statVar": "Count_Person_Illiterate_Female" @@ -689,6 +690,18 @@ "childPlaces": {}, "childTopics": [], "exploreMore": { + "Count_Person_Houseless_Illiterate": { + "placeOfResidenceClassification": [ + "Count_Person_Houseless_Illiterate_Rural", + "Count_Person_Houseless_Illiterate_Urban" + ] + }, + "Count_Person_Houseless_Illiterate_Rural": { + "gender": [ + "Count_Person_Houseless_Illiterate_Rural_Female", + "Count_Person_Houseless_Illiterate_Rural_Male" + ] + }, "Count_Person_Houseless_Illiterate_Urban": { "gender": [ "Count_Person_Houseless_Illiterate_Urban_Female", diff --git a/server/integration_tests/test_data/e2e_india_demo/whichstatesinindiahavethehighestpovertylevelspercapita/chart_config.json b/server/integration_tests/test_data/e2e_india_demo/whichstatesinindiahavethehighestpovertylevelspercapita/chart_config.json index fe555ceb1b..af075076f7 100644 --- a/server/integration_tests/test_data/e2e_india_demo/whichstatesinindiahavethehighestpovertylevelspercapita/chart_config.json +++ b/server/integration_tests/test_data/e2e_india_demo/whichstatesinindiahavethehighestpovertylevelspercapita/chart_config.json @@ -879,13 +879,6 @@ } ], "peerTopics": [ - { - "dcid": "dc/topic/Employment", - "name": "Employment", - "types": [ - "Topic" - ] - }, { "dcid": "dc/topic/GlobalEconomicActivity", "name": "Global Economic Activity", diff --git a/server/integration_tests/test_data/e2e_sdg_main_dc/compareprogressonpovertyinmexico,nigeriaandpakistan/chart_config.json b/server/integration_tests/test_data/e2e_sdg_main_dc/compareprogressonpovertyinmexico,nigeriaandpakistan/chart_config.json index f2007a0107..f718e74448 100644 --- a/server/integration_tests/test_data/e2e_sdg_main_dc/compareprogressonpovertyinmexico,nigeriaandpakistan/chart_config.json +++ b/server/integration_tests/test_data/e2e_sdg_main_dc/compareprogressonpovertyinmexico,nigeriaandpakistan/chart_config.json @@ -299,13 +299,6 @@ ], "peerPlaces": [], "peerTopics": [ - { - "dcid": "dc/topic/Employment", - "name": "Employment", - "types": [ - "Topic" - ] - }, { "dcid": "dc/topic/GlobalEconomicActivity", "name": "Global Economic Activity", diff --git a/server/integration_tests/test_data/e2e_triple/howaboutforp53/chart_config.json b/server/integration_tests/test_data/e2e_triple/howaboutforp53/chart_config.json index 2a93420820..ba4687bb47 100644 --- a/server/integration_tests/test_data/e2e_triple/howaboutforp53/chart_config.json +++ b/server/integration_tests/test_data/e2e_triple/howaboutforp53/chart_config.json @@ -1,15 +1,708 @@ { "client": "test_detect-and-fulfill", - "config": {}, + "config": { + "categories": [ + { + "blocks": [ + { + "columns": [ + { + "tiles": [ + { + "answerTableTileSpec": { + "columns": [ + { + "header": "Alliance Of Genome Resources Id", + "propertyExpr": "->allianceOfGenomeResourcesId" + }, + { + "header": "Chrom", + "propertyExpr": "->chrom" + }, + { + "header": "Cytogenetic Map Location", + "propertyExpr": "->cytogeneticMapLocation" + }, + { + "header": "Date Modified", + "propertyExpr": "->dateModified" + }, + { + "header": "Description", + "propertyExpr": "->description" + }, + { + "header": "Ensembl Gene Id", + "propertyExpr": "->ensemblGeneId" + }, + { + "header": "Ensembl Rapid Release Id", + "propertyExpr": "->ensemblRapidReleaseId" + }, + { + "header": "Fly Base Id", + "propertyExpr": "->flyBaseId" + }, + { + "header": "Full Name", + "propertyExpr": "->fullName" + }, + { + "header": "Gene Ortholog", + "propertyExpr": "->geneOrtholog" + }, + { + "header": "Gene Symbol", + "propertyExpr": "->geneSymbol" + }, + { + "header": "Has Genomic Coordinates", + "propertyExpr": "->hasGenomicCoordinates" + }, + { + "header": "Name", + "propertyExpr": "->name" + }, + { + "header": "Nasonia Base Id", + "propertyExpr": "->nasoniaBaseId" + }, + { + "header": "Ncbi Gene ID", + "propertyExpr": "->ncbiGeneID" + }, + { + "header": "Ncbi Sequence Gi Number", + "propertyExpr": "->ncbiSequenceGiNumber" + }, + { + "header": "Of Species", + "propertyExpr": "->ofSpecies" + }, + { + "header": "Provenance", + "propertyExpr": "->provenance" + }, + { + "header": "Pub Med ID", + "propertyExpr": "->pubMedID" + }, + { + "header": "Ref Seq Genomic Accession", + "propertyExpr": "->refSeqGenomicAccession" + }, + { + "header": "Synonym", + "propertyExpr": "->synonym" + }, + { + "header": "Type Of", + "propertyExpr": "->typeOf" + }, + { + "header": "Type Of Gene", + "propertyExpr": "->typeOfGene" + } + ] + }, + "entities": [ + "bio/ncbi_100116126", + "bio/ncbi_100384887", + "bio/ncbi_100648488", + "bio/ncbi_100748472", + "bio/ncbi_100862994", + "bio/ncbi_100880552", + "bio/ncbi_102673235", + "bio/ncbi_103571032", + "bio/ncbi_105153546", + "bio/ncbi_105191985", + "bio/ncbi_105208183", + "bio/ncbi_105254636", + "bio/ncbi_105262739", + "bio/ncbi_105279045", + "bio/ncbi_105362659", + "bio/ncbi_105432841", + "bio/ncbi_105459353", + "bio/ncbi_105569139", + "bio/ncbi_105618583", + "bio/ncbi_105675615", + "bio/ncbi_105689091", + "bio/ncbi_105698580", + "bio/ncbi_105838456", + "bio/ncbi_106639380", + "bio/ncbi_106658358", + "bio/ncbi_106745060", + "bio/ncbi_106788176", + "bio/ncbi_107042628", + "bio/ncbi_107066338", + "bio/ncbi_107189253", + "bio/ncbi_107225289", + "bio/ncbi_107265501", + "bio/ncbi_107995588", + "bio/ncbi_108545268", + "bio/ncbi_108570248", + "bio/ncbi_108631837", + "bio/ncbi_108691270", + "bio/ncbi_108727983", + "bio/ncbi_108748092", + "bio/ncbi_108767092", + "bio/ncbi_108781309", + "bio/ncbi_109856991", + "bio/ncbi_112460253", + "bio/ncbi_114879319", + "bio/ncbi_114932480", + "bio/ncbi_115239461", + "bio/ncbi_116433506", + "bio/ncbi_116840453", + "bio/ncbi_117157365", + "bio/ncbi_117168497", + "bio/ncbi_117205777", + "bio/ncbi_117229339", + "bio/ncbi_117233976", + "bio/ncbi_117603631", + "bio/ncbi_118072630", + "bio/ncbi_118446045", + "bio/ncbi_122405354", + "bio/ncbi_122407929", + "bio/ncbi_122510677", + "bio/ncbi_122526586", + "bio/ncbi_122529794", + "bio/ncbi_122575581", + "bio/ncbi_122627339", + "bio/ncbi_122713845", + "bio/ncbi_122854147", + "bio/ncbi_123263553", + "bio/ncbi_124184389", + "bio/ncbi_124220898", + "bio/ncbi_124306655", + "bio/ncbi_124413059", + "bio/ncbi_124421799", + "bio/ncbi_124954635", + "bio/ncbi_126856388", + "bio/ncbi_126870169", + "bio/ncbi_126924324", + "bio/ncbi_127069822", + "bio/ncbi_127282513", + "bio/ncbi_128874625", + "bio/ncbi_128889118", + "bio/ncbi_130669610", + "bio/ncbi_131673312", + "bio/ncbi_132911847", + "bio/ncbi_13405080", + "bio/ncbi_135164074", + "bio/ncbi_136772661", + "bio/ncbi_137238056", + "bio/ncbi_137584463", + "bio/ncbi_137923949", + "bio/ncbi_138184182", + "bio/ncbi_24590706", + "bio/ncbi_27205858", + "bio/ncbi_2768677", + "bio/ncbi_55632361", + "bio/ncbi_7020953" + ], + "title": "Here are all the properties for p53", + "type": "ANSWER_TABLE" + } + ] + } + ] + } + ] + } + ] + }, "context": {}, "debug": {}, - 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"mainTopics": [], + "parentPlaces": [], + "parentTopics": [], + "peerPlaces": [], + "peerTopics": [] }, + "svSource": "UNKNOWN", "userMessages": [ - "Sorry, could not complete your request. No entity found in the query." + "See relevant information based on the previous query." ] } \ No newline at end of file diff --git a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317/chart_config.json b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317/chart_config.json index af14d1dfc7..79a59ad2d0 100644 --- a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317/chart_config.json +++ b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317/chart_config.json @@ -12,160 +12,16 @@ "answerTableTileSpec": { "columns": [ { - "header": "Abbreviation", - "propertyExpr": "->abbreviation" - }, - { - "header": "Alternate Name", - "propertyExpr": "->alternateName" - }, - { - "header": "Biological Host", - "propertyExpr": "->biologicalHost" - }, - { - "header": "Date Created", - "propertyExpr": "->dateCreated" - }, - { - "header": "Date Established", - "propertyExpr": "->dateEstablished" - }, - { - "header": "Date Revised", - "propertyExpr": "->dateRevised" - }, - { - "header": "Description", - "propertyExpr": "->description" - }, - { - "header": "Has Inherited Divsion", - "propertyExpr": "->hasInheritedDivsion" - }, - { - "header": "Has MeSH Qualifier", - "propertyExpr": "->hasMeSHQualifier" - }, - { - "header": "Identifier", - "propertyExpr": "->identifier" - }, - { - "header": "Medical Subject Heading Tree Number", - "propertyExpr": "->medicalSubjectHeadingTreeNumber" - }, - { - "header": "Name", - "propertyExpr": "->name" - }, - { - "header": "Ncbi Tax Id", - "propertyExpr": "->ncbiTaxId" - }, - { - "header": "Proposal For Last Change", - "propertyExpr": "->proposalForLastChange" - }, - { - "header": "Provenance", - "propertyExpr": "->provenance" - }, - { - "header": "Scientific Name", - "propertyExpr": "->scientificName" - }, - { - "header": "Specialization Of", - "propertyExpr": "->specializationOf" - }, - { - "header": "Taxon Division", - "propertyExpr": "->taxonDivision" - }, - { - "header": "Taxon History URL", - "propertyExpr": "->taxonHistoryURL" - }, - { - "header": "Taxon Rank", - "propertyExpr": "->taxonRank" - }, - { - "header": "Taxon Top Level Category", - "propertyExpr": "->taxonTopLevelCategory" - }, - { - "header": "Type Of", - "propertyExpr": "->typeOf" - }, - { - "header": "Version Of Last Change", - "propertyExpr": "->versionOfLastChange" - }, - { - "header": "Virus Class", - "propertyExpr": "->virusClass" - }, - { - "header": "Virus Family", - "propertyExpr": "->virusFamily" - }, - { - "header": "Virus Genome Composition", - "propertyExpr": "->virusGenomeComposition" - }, - { - "header": "Virus Genus", - "propertyExpr": "->virusGenus" - }, - { - "header": "Virus Host", - "propertyExpr": "->virusHost" - }, - { - "header": "Virus Kingdom", - "propertyExpr": "->virusKingdom" - }, - { - "header": "Virus Last Taxonomic Change", - "propertyExpr": "->virusLastTaxonomicChange" - }, - { - "header": "Virus Order", - "propertyExpr": "->virusOrder" - }, - { - "header": "Virus Phylum", - "propertyExpr": "->virusPhylum" - }, - { - "header": "Virus Realm", - "propertyExpr": "->virusRealm" - }, - { - "header": "Virus Species", - "propertyExpr": "->virusSpecies" - }, - { - "header": "Virus Subfamily", - "propertyExpr": "->virusSubfamily" - }, - { - "header": "Virus Subgenus", - "propertyExpr": "->virusSubgenus" - }, - { - "header": "Virus Suborder", - "propertyExpr": "->virusSuborder" + "header": "Full Name", + "propertyExpr": "->fullName" } ] }, "entities": [ - "bio/Betacoronavirus1", - "bio/D000073641" + "bio/ncbi_59246804", + "bio/ncbi_59275321" ], - "title": "Here are all the properties for Betacoronavirus 1", + "title": "The Full Name for are are as follows:", "type": "ANSWER_TABLE" } ] @@ -180,13 +36,13 @@ "debug": {}, "entities": [ { - "dcid": "bio/Betacoronavirus1", - "name": "Betacoronavirus 1", + "dcid": "bio/ncbi_59246804", + "name": "are", "type": "" }, { - "dcid": "bio/D000073641", - "name": "Betacoronavirus 1", + "dcid": "bio/ncbi_59275321", + "name": "are", "type": "" } ], @@ -206,7 +62,5 @@ "peerTopics": [] }, "svSource": "UNKNOWN", - "userMessages": [ - "See relevant information for Betacoronavirus 1 based on the previous query." - ] + "userMessages": [] } \ No newline at end of file diff --git a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json index 03140d5885..2e61bd8c5d 100644 --- a/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json +++ b/server/integration_tests/test_data/e2e_triple/whatgenesareassociatedwiththegeneticvariantrs13317andrs7903146/chart_config.json @@ -9,28 +9,20 @@ { "tiles": [ { - "answerMessageTileSpec": { - "propertyExpr": "<-geneticVariantID{typeOf:DiseaseGeneticVariantAssociation}->diseaseID" + "answerTableTileSpec": { + "columns": [ + { + "header": "Full Name", + "propertyExpr": "->fullName" + } + ] }, "entities": [ - "bio/rs7903146" + "bio/ncbi_59246804", + "bio/ncbi_59275321" ], - "title": "The associated diseases for rs7903146 are", - "type": "ANSWER_MESSAGE" - } - ] - } - ] - }, - { - "columns": [ - { - "tiles": [ - { - "entities": [ - "bio/rs7903146" - ], - "type": "ENTITY_OVERVIEW" + "title": "The Full Name for are are as follows:", + "type": "ANSWER_TABLE" } ] } @@ -43,6 +35,16 @@ "context": {}, "debug": {}, "entities": [ + { + "dcid": "bio/ncbi_59246804", + "name": "are", + "type": "" + }, + { + "dcid": "bio/ncbi_59275321", + "name": "are", + "type": "" + }, { "dcid": "bio/rs7903146", "name": "rs7903146", @@ -65,7 +67,5 @@ "peerTopics": [] }, "svSource": "UNKNOWN", - "userMessages": [ - "Low confidence in understanding your query. Displaying the closest results." - ] + "userMessages": [] } \ No newline at end of file diff --git a/server/integration_tests/test_data/e2e_triple/whatstrandorientationdoesfgfr1have/chart_config.json b/server/integration_tests/test_data/e2e_triple/whatstrandorientationdoesfgfr1have/chart_config.json index 0c073e89c1..ec137493c2 100644 --- a/server/integration_tests/test_data/e2e_triple/whatstrandorientationdoesfgfr1have/chart_config.json +++ b/server/integration_tests/test_data/e2e_triple/whatstrandorientationdoesfgfr1have/chart_config.json @@ -9,10 +9,578 @@ { "tiles": [ { + "answerTableTileSpec": { + "columns": [ + { + "header": "Alliance Of Genome Resources Id", + "propertyExpr": "->allianceOfGenomeResourcesId" + }, + { + "header": "Alternate Gene Symbol", + "propertyExpr": "->alternateGeneSymbol" + }, + { + "header": "Bovine Genome Database Id", + "propertyExpr": "->bovineGenomeDatabaseId" + }, + { + "header": "Chicken Gene Nomenclature Consortium Id", + "propertyExpr": "->chickenGeneNomenclatureConsortiumId" + }, + { + "header": "Chrom", + "propertyExpr": "->chrom" + }, + { + "header": "Comparative Toxicogenomics DBID", + "propertyExpr": "->comparativeToxicogenomicsDBID" + }, + { + "header": "Cytogenetic Map Location", + "propertyExpr": "->cytogeneticMapLocation" + }, + { + "header": "Date Modified", + "propertyExpr": "->dateModified" + }, + { + "header": "Description", + "propertyExpr": "->description" + }, + { + "header": "Ensembl Gene Id", + "propertyExpr": "->ensemblGeneId" + }, + { + "header": "Ensembl ID", + "propertyExpr": "->ensemblID" + }, + { + "header": "Ensembl Rapid Release Id", + "propertyExpr": "->ensemblRapidReleaseId" + }, + { + "header": "Full Name", + "propertyExpr": "->fullName" + }, + { + "header": "Gen Atlas ID", + "propertyExpr": "->genAtlasID" + }, + { + "header": "Gene Card ID", + "propertyExpr": "->geneCardID" + }, + { + "header": "Gene Ortholog", + "propertyExpr": "->geneOrtholog" + }, + { + "header": "Gene Symbol", + "propertyExpr": "->geneSymbol" + }, + { + "header": "Has Cpic Dosing Guideline", + "propertyExpr": "->hasCpicDosingGuideline" + }, + { + "header": "Has Genetic Variant Annotation", + "propertyExpr": "->hasGeneticVariantAnnotation" + }, + { + "header": "Has Genomic Coordinates", + "propertyExpr": "->hasGenomicCoordinates" + }, + { + "header": "Hgnc ID", + "propertyExpr": "->hgncID" + }, + { + "header": "Is Very Important Pharmacogene", + "propertyExpr": "->isVeryImportantPharmacogene" + }, + { + "header": "Mouse Genome Informatics Id", + "propertyExpr": "->mouseGenomeInformaticsId" + }, + { + "header": "Name", + "propertyExpr": "->name" + }, + { + "header": "Ncbi Gene ID", + "propertyExpr": "->ncbiGeneID" + }, + { + "header": "Ncbi Sequence Gi Number", + "propertyExpr": "->ncbiSequenceGiNumber" + }, + { + "header": "Of Species", + "propertyExpr": "->ofSpecies" + }, + { + "header": "Online Mendelian Inheritance In Man ID", + "propertyExpr": "->onlineMendelianInheritanceInManID" + }, + { + "header": "Pharm GKBID", + "propertyExpr": "->pharmGKBID" + }, + { + "header": "Provenance", + "propertyExpr": "->provenance" + }, + { + "header": "Pub Med ID", + "propertyExpr": "->pubMedID" + }, + { + "header": "Rat Genome Database Id", + "propertyExpr": "->ratGenomeDatabaseId" + }, + { + "header": "Ref Seq Genomic Accession", + "propertyExpr": "->refSeqGenomicAccession" + }, + { + "header": "Related Pseudogene", + "propertyExpr": "->relatedPseudogene" + }, + { + "header": "Synonym", + "propertyExpr": "->synonym" + }, + { + "header": "Type Of", + "propertyExpr": "->typeOf" + }, + { + "header": "Type Of Gene", + "propertyExpr": "->typeOfGene" + }, + { + "header": "Vertebrate Gene Nomenclature Committee Id", + "propertyExpr": "->vertebrateGeneNomenclatureCommitteeId" + }, + { + "header": "Xenbase Id", + "propertyExpr": "->xenbaseId" + } + ] + }, "entities": [ - "bio/FGFR1" + "bio/FGFR1", + "bio/ncbi_100029852", + "bio/ncbi_100057614", + "bio/ncbi_100074240", + "bio/ncbi_100153248", + "bio/ncbi_100174545", + "bio/ncbi_100221243", + "bio/ncbi_100351861", + "bio/ncbi_100390192", + "bio/ncbi_100472630", + "bio/ncbi_100547498", + "bio/ncbi_100559018", + "bio/ncbi_100602423", + "bio/ncbi_100662289", + "bio/ncbi_100731156", + "bio/ncbi_100773586", + "bio/ncbi_100856477", + "bio/ncbi_100914347", + "bio/ncbi_100960708", + "bio/ncbi_100988115", + "bio/ncbi_101002603", + "bio/ncbi_101033213", + "bio/ncbi_101086055", + "bio/ncbi_101152179", + "bio/ncbi_101279623", + "bio/ncbi_101338609", + "bio/ncbi_101342270", + "bio/ncbi_101364849", + "bio/ncbi_101427669", + "bio/ncbi_101534918", + "bio/ncbi_101544250", + "bio/ncbi_101588120", + "bio/ncbi_101617102", + "bio/ncbi_101629379", + "bio/ncbi_101650479", + "bio/ncbi_101691149", + "bio/ncbi_101700324", + "bio/ncbi_101822220", + "bio/ncbi_101842486", + "bio/ncbi_101914093", + "bio/ncbi_101941076", + "bio/ncbi_101977965", + "bio/ncbi_101998996", + "bio/ncbi_102024657", + "bio/ncbi_102055369", + "bio/ncbi_102085235", + "bio/ncbi_102103637", + "bio/ncbi_102144714", + "bio/ncbi_102180282", + "bio/ncbi_102253832", + "bio/ncbi_102267776", + "bio/ncbi_102386174", + "bio/ncbi_102407288", + "bio/ncbi_102423450", + "bio/ncbi_102461506", + "bio/ncbi_102484087", + "bio/ncbi_102515264", + "bio/ncbi_102531272", + "bio/ncbi_102574117", + "bio/ncbi_102734086", + "bio/ncbi_102759202", + "bio/ncbi_102836047", + "bio/ncbi_102868898", + "bio/ncbi_102898943", + "bio/ncbi_102925907", + "bio/ncbi_102942878", + "bio/ncbi_102972346", + "bio/ncbi_102989551", + "bio/ncbi_103017733", + "bio/ncbi_103066603", + "bio/ncbi_103069902", + "bio/ncbi_103107883", + "bio/ncbi_103192070", + "bio/ncbi_103215648", + "bio/ncbi_103274944", + "bio/ncbi_103290249", + "bio/ncbi_103535383", + "bio/ncbi_103560266", + "bio/ncbi_103598755", + "bio/ncbi_103614656", + "bio/ncbi_103659146", + "bio/ncbi_103745770", + "bio/ncbi_103763194", + "bio/ncbi_103822693", + "bio/ncbi_103897295", + "bio/ncbi_103912362", + "bio/ncbi_104016019", + 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"bio/ncbi_131394045", + "bio/ncbi_131506723", + "bio/ncbi_131568234", + "bio/ncbi_131589574", + "bio/ncbi_131747394", + "bio/ncbi_131820646", + "bio/ncbi_131894317", + "bio/ncbi_132006317", + "bio/ncbi_132085309", + "bio/ncbi_132228629", + "bio/ncbi_132340003", + "bio/ncbi_132356642", + "bio/ncbi_132417589", + "bio/ncbi_132481231", + "bio/ncbi_132512743", + "bio/ncbi_132580696", + "bio/ncbi_132691808", + "bio/ncbi_132782814", + "bio/ncbi_133050609", + "bio/ncbi_133081191", + "bio/ncbi_133210375", + "bio/ncbi_133240011", + "bio/ncbi_133279078", + "bio/ncbi_133368378", + "bio/ncbi_133775339", + "bio/ncbi_134054801", + "bio/ncbi_134151986", + "bio/ncbi_134164844", + "bio/ncbi_134361584", + "bio/ncbi_134407481", + "bio/ncbi_134428540", + "bio/ncbi_134502736", + "bio/ncbi_134526559", + "bio/ncbi_134562645", + "bio/ncbi_134602949", + "bio/ncbi_134936489", + "bio/ncbi_135192481", + "bio/ncbi_135287060", + "bio/ncbi_135317111", + "bio/ncbi_135403713", + "bio/ncbi_135456901", + "bio/ncbi_135873608", + "bio/ncbi_135998389", + "bio/ncbi_136003469", + "bio/ncbi_136055404", + "bio/ncbi_136112305", + "bio/ncbi_136141836", + "bio/ncbi_136176884", + "bio/ncbi_136302859", + "bio/ncbi_136309122", + "bio/ncbi_136372585", + "bio/ncbi_136402705", + "bio/ncbi_136567545", + "bio/ncbi_136612758", + "bio/ncbi_136662257", + "bio/ncbi_137150943", + "bio/ncbi_137216053", + "bio/ncbi_137450336", + "bio/ncbi_137463441", + "bio/ncbi_137562857", + "bio/ncbi_137675452", + "bio/ncbi_137756000", + "bio/ncbi_137845221", + "bio/ncbi_138079229", + "bio/ncbi_138121591", + "bio/ncbi_138152113", + "bio/ncbi_138265881", + "bio/ncbi_14182", + "bio/ncbi_281768", + "bio/ncbi_396516", + "bio/ncbi_464122", + "bio/ncbi_548648", + "bio/ncbi_700126", + "bio/ncbi_780507", + "bio/ncbi_79114" ], - "type": "ENTITY_OVERVIEW" + "title": "Here are all the properties for FGFR1", + "type": "ANSWER_TABLE" } ] } @@ -29,6 +597,2041 @@ "dcid": "bio/FGFR1", "name": "FGFR1", "type": "" + }, + { + "dcid": "bio/ncbi_100029852", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100057614", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100074240", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100153248", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100174545", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100221243", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100351861", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100390192", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100472630", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100547498", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100559018", + "name": "fgfr1", + "type": "" + }, + { + "dcid": "bio/ncbi_100602423", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100662289", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100731156", + "name": "Fgfr1", + "type": 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"bio/ncbi_137150943", + "bio/ncbi_137216053", + "bio/ncbi_137450336", + "bio/ncbi_137463441", + "bio/ncbi_137562857", + "bio/ncbi_137675452", + "bio/ncbi_137756000", + "bio/ncbi_137845221", + "bio/ncbi_138079229", + "bio/ncbi_138121591", + "bio/ncbi_138152113", + "bio/ncbi_138265881", + "bio/ncbi_14182", + "bio/ncbi_281768", + "bio/ncbi_396516", + "bio/ncbi_464122", + "bio/ncbi_548648", + "bio/ncbi_700126", + "bio/ncbi_780507", + "bio/ncbi_79114" ], - "type": "ENTITY_OVERVIEW" + "title": "Here are all the properties for FGFR1", + "type": "ANSWER_TABLE" } ] } @@ -29,6 +597,2041 @@ "dcid": "bio/FGFR1", "name": "FGFR1", "type": "" + }, + { + "dcid": "bio/ncbi_100029852", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100057614", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100074240", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100153248", + "name": "FGFR1", + "type": "" + }, + { + "dcid": "bio/ncbi_100174545", + "name": "FGFR1", + "type": "" 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"Chrom", + "propertyExpr": "->chrom" + }, + { + "header": "Clinical Annotation Count", + "propertyExpr": "->clinicalAnnotationCount" + }, + { + "header": "Clinical Annotation Count Level1_2", + "propertyExpr": "->clinicalAnnotationCountLevel1_2" + }, + { + "header": "Clinical Guideline Annotation Count", + "propertyExpr": "->clinicalGuidelineAnnotationCount" + }, + { + "header": "Cytogenetic Map Location", + "propertyExpr": "->cytogeneticMapLocation" + }, + { + "header": "Date Modified", + "propertyExpr": "->dateModified" + }, + { + "header": "Description", + "propertyExpr": "->description" + }, + { + "header": "Drug Label Annotation Count", + "propertyExpr": "->drugLabelAnnotationCount" + }, + { + "header": "Full Name", + "propertyExpr": "->fullName" + }, + { + "header": "Gene Symbol", + "propertyExpr": "->geneSymbol" + }, + { + "header": "Genetic Variant Annotation Count", + "propertyExpr": "->geneticVariantAnnotationCount" + }, + { + "header": "Has Genomic Coordinates", + "propertyExpr": "->hasGenomicCoordinates" + }, + { + "header": "Name", + "propertyExpr": "->name" + }, + { + "header": "Ncbi Gene ID", + "propertyExpr": "->ncbiGeneID" + }, + { + "header": "Ncbi Sequence Gi Number", + "propertyExpr": "->ncbiSequenceGiNumber" + }, + { + "header": "Of Species", + "propertyExpr": "->ofSpecies" + }, + { + "header": "Pharm GKBID", + "propertyExpr": "->pharmGKBID" + }, + { + "header": "Provenance", + "propertyExpr": "->provenance" + }, + { + "header": "Pub Med ID", + "propertyExpr": "->pubMedID" + }, + { + "header": "Ref Seq Genomic Accession", + "propertyExpr": "->refSeqGenomicAccession" + }, + { + "header": "Rs ID", + "propertyExpr": "->rsID" + }, + { + "header": "Synonym", + "propertyExpr": "->synonym" + }, + { + "header": "Type Of", + "propertyExpr": "->typeOf" + } + ] + }, "entities": [ + "bio/ncbi_59246804", + "bio/ncbi_59275321", "bio/rs7903146" ], - "type": "ENTITY_OVERVIEW" + "title": "Here are all the properties for are and rs7903146", + "type": "ANSWER_TABLE" } ] } @@ -25,6 +124,16 @@ "context": {}, "debug": {}, "entities": [ + { + "dcid": "bio/ncbi_59246804", + "name": "are", + "type": "" + }, + { + "dcid": "bio/ncbi_59275321", + "name": "are", + "type": "" + }, { "dcid": "bio/rs7903146", "name": "rs7903146", diff --git a/server/integration_tests/test_data/e2e_undata/cultureiniran/chart_config.json b/server/integration_tests/test_data/e2e_undata/cultureiniran/chart_config.json index 12dfab4eb8..c2dcd37ac7 100644 --- a/server/integration_tests/test_data/e2e_undata/cultureiniran/chart_config.json +++ b/server/integration_tests/test_data/e2e_undata/cultureiniran/chart_config.json @@ -9,1086 +9,13 @@ { "tiles": [ { - "description": "ICT Development Index (IDI) in Iran (Islamic Republic Of)", - "statVarKey": [ - "who/ITU_IDI" - ], - "title": "ICT Development Index (IDI) in Iran (Islamic Republic Of)", - "type": "HIGHLIGHT" - } - ] - }, - { - "tiles": [ - { - "statVarKey": [ - "who/ITU_IDI" - ], - "title": "ICT Development Index 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"parentPlaces": [], - "parentTopics": [ - { - "dcid": "dc/topic/UN", - "name": "12 UN Data Thematic Areas", - "types": [ - "Topic" - ] - } - ], + "parentTopics": [], "peerPlaces": [ { "dcid": "country/BRA", @@ -1253,79 +164,11 @@ ] } ], - "peerTopics": [ - { - "dcid": "dc/topic/UN_THEME_1", - "name": "1: Poverty and food security", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_2", - "name": "2: Health", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_3", - "name": "3: Children and youth", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_5", - "name": "5: Equality and human rights", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_6", - "name": "6: Economic development", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_8", - "name": "8: Drinking water, sanitation and hygiene", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_9", - "name": "9: Climate and the environment", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_10", - "name": "10: Population and demography", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_11", - "name": "11: Disasters and humanitarian action", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_12", - "name": "12: Governance and peace", - "types": [ - "Topic" - ] - } - ] + "peerTopics": [] }, - "svSource": "CURRENT_QUERY", - "userMessages": [] + "showForm": true, + "svSource": "UNFULFILLED", + "userMessages": [ + "Sorry, there were no relevant statistics about the topic for Iran (Islamic Republic of)." + ] } \ No newline at end of file diff --git a/server/integration_tests/test_data/e2e_undata/pulmonarydiseasesintheworld/chart_config.json b/server/integration_tests/test_data/e2e_undata/pulmonarydiseasesintheworld/chart_config.json index 902e796a2d..17ff7e5c52 100644 --- a/server/integration_tests/test_data/e2e_undata/pulmonarydiseasesintheworld/chart_config.json +++ 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"who/GHE_YLLNUM.GHECAUSES--GHE119" - }, - "who/GHE_YLLNUM.GHECAUSES--GHE119__SEX--F": { - "name": "Years of life lost from mortality (YLLs) [Asthma, Female]", - "statVar": "who/GHE_YLLNUM.GHECAUSES--GHE119__SEX--F" - }, - "who/GHE_YLLNUM.GHECAUSES--GHE119__SEX--M": { - "name": "Years of life lost from mortality (YLLs) [Asthma, Male]", - "statVar": "who/GHE_YLLNUM.GHECAUSES--GHE119__SEX--M" - }, - "who/GHE_YLLNUM.GHECAUSES--GHE120": { - "name": "Years of life lost from mortality (YLLs) [Other respiratory diseases]", - "statVar": "who/GHE_YLLNUM.GHECAUSES--GHE120" - }, - "who/GHE_YLLNUM.GHECAUSES--GHE120__SEX--F": { - "name": "Years of life lost from mortality (YLLs) [Other respiratory diseases, Female]", - "statVar": "who/GHE_YLLNUM.GHECAUSES--GHE120__SEX--F" - }, - "who/GHE_YLLNUM.GHECAUSES--GHE120__SEX--M": { - "name": "Years of life lost from mortality (YLLs) [Other respiratory diseases, Male]", - "statVar": "who/GHE_YLLNUM.GHECAUSES--GHE120__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE013": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Whooping cough]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE013" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE013__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Whooping cough, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE013__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE013__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Whooping cough, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE013__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE038": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Respiratory infections]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE038" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE038__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Respiratory infections, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE038__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE038__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Respiratory infections, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE038__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE039": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Lower respiratory infections]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE039" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE039__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Lower respiratory infections, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE039__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE039__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Lower respiratory infections, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE039__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE040": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Upper respiratory infections]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE040" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE040__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Upper respiratory infections, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE040__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE040__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Upper respiratory infections, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE040__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE117": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Chronic respiratory diseases]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE117" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE117__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Chronic respiratory diseases, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE117__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE117__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Chronic respiratory diseases, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE117__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE118": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Chronic obstructive pulmonary disease]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE118" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE118__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Chronic obstructive pulmonary disease, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE118__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE118__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Chronic obstructive pulmonary disease, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE118__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE119": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Asthma]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE119" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE119__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Asthma, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE119__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE119__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Asthma, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE119__SEX--M" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE120": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Other respiratory diseases]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE120" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE120__SEX--F": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Other respiratory diseases, Female]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE120__SEX--F" - }, - "who/GHE_YLLRATE.GHECAUSES--GHE120__SEX--M": { - "name": "Years of life lost from mortality (YLLs) (per 100 000 population) [Other respiratory diseases, Male]", - "statVar": "who/GHE_YLLRATE.GHECAUSES--GHE120__SEX--M" - }, - "who/TB_new_sn": { - "name": "New tuberculosis cases: pulmonary smear-negative", - "statVar": "who/TB_new_sn" - }, - "who/TB_new_snsuoth": { - "name": "New tuberculosis cases: Pulmonary, smear-negative/unknown/not done and other new cases", - "statVar": "who/TB_new_snsuoth" - }, - "who/TB_new_sp": { - "name": "New tuberculosis cases: Pulmonary, smear-positive", - "statVar": "who/TB_new_sp" - }, - "who/TB_new_su": { - "name": "New tuberculosis cases: pulmonary smear unknown/not done", - "statVar": "who/TB_new_su" + ] } - } + ] } ], "metadata": { - "containedPlaceTypes": { - "Place": "Country" - }, "placeDcid": [ "Earth" ] @@ -7501,366 +43,13 @@ } ], "relatedThings": { - "childPlaces": { - "Country": [ - { - "dcid": "country/ABW", - "name": "Aruba", - "types": [ - "Country" - ] - }, - { - "dcid": "country/AFG", - "name": "Afghanistan", - "types": [ - "Country" - ] - }, - { - "dcid": "country/AGO", - "name": "Angola", - "types": [ - "Country" - ] - }, - { - "dcid": "country/AIA", - "name": "Anguilla", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ALA", - "name": "\u00c5land Islands", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ALB", - "name": "Albania", - "types": [ - "Country" - ] - }, - { - "dcid": "country/AND", - "name": "Andorra", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ANT", - "name": "Netherlands Antilles", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ARE", - "name": "United Arab Emirates", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ARG", - "name": "Argentina", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ARM", - "name": "Armenia", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ASM", - "name": "American Samoa", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ATA", - "name": "Antarctica", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ATB", - "name": "British Antarctic Territory", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ATF", - "name": "French Southern Territories", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ATG", - "name": "Antigua and Barbuda", - "types": [ - "Country" - ] - }, - { - "dcid": "country/ATN", - "name": "Dronning Maud Land", - "types": [ - "Country" - ] - }, - { - "dcid": "country/AUS", - "name": "Australia", - "types": [ - "Country" - ] - }, - { - "dcid": "country/AUT", - "name": "Austria", - "types": [ - "Country" - ] - }, - { - "dcid": "country/AZE", - "name": "Azerbaijan", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BDI", - "name": "Burundi", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BEL", - "name": "Belgium", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BEN", - "name": "Benin", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BES", - "name": "Bonaire, Sint Eustatius and Saba", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BFA", - "name": "Burkina Faso", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BGD", - "name": "Bangladesh", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BGR", - "name": "Bulgaria", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BHR", - "name": "Bahrain", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BHS", - "name": "Bahamas", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BIH", - "name": "Bosnia and Herzegovina", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BLM", - "name": "Saint Barth\u00e9lemy", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BLR", - "name": "Belarus", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BLZ", - "name": "Belize", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BMU", - "name": "Bermuda", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BOL", - "name": "Bolivia", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BRA", - "name": "Brazil", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BRB", - "name": "Barbados", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BRN", - "name": "Brunei", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BTN", - "name": "Bhutan", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BVT", - "name": "Bouvet Island", - "types": [ - "Country" - ] - }, - { - "dcid": "country/BWA", - "name": "Botswana", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CAF", - "name": "Central African Republic", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CAN", - "name": "Canada", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CCK", - "name": "Cocos (Keeling) Islands", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CHE", - "name": "Switzerland", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CHL", - "name": "Chile", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CHN", - "name": "China", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CIV", - "name": "C\u00f4te d'Ivoire", - "types": [ - "Country" - ] - }, - { - "dcid": "country/CMR", - "name": "Cameroon", - "types": [ - "Country" - ] - }, - { - "dcid": "country/COD", - "name": "Congo [DRC]", - "types": [ - "Country" - ] - } - ] - }, + "childPlaces": {}, "childTopics": [], "exploreMore": {}, "mainTopics": [ { - "dcid": "dc/topic/WHO_GhecausesEnum_GHE118", - "name": "Chronic obstructive pulmonary disease", + "dcid": "dc/topic/Root", + "name": "Statistics", "types": [ "Topic" ] @@ -7871,6 +60,9 @@ "peerPlaces": [], "peerTopics": [] }, - "svSource": "CURRENT_QUERY", - "userMessages": [] + "showForm": true, + "svSource": "UNFULFILLED", + "userMessages": [ + "Sorry, there were no relevant statistics about the topic for World." + ] } \ No newline at end of file diff --git a/server/integration_tests/test_data/e2e_us_demo/whichcountiesintheushavethehighestlevelsofdiabetes/chart_config.json b/server/integration_tests/test_data/e2e_us_demo/whichcountiesintheushavethehighestlevelsofdiabetes/chart_config.json index a14903cb18..5b56b09478 100644 --- a/server/integration_tests/test_data/e2e_us_demo/whichcountiesintheushavethehighestlevelsofdiabetes/chart_config.json +++ b/server/integration_tests/test_data/e2e_us_demo/whichcountiesintheushavethehighestlevelsofdiabetes/chart_config.json @@ -94,23 +94,6 @@ ], "title": "Percent of Population 20 Years or Older With Diabetes in Counties of United States" }, - { - "columns": [ - { - "tiles": [ - { - "description": "Age-Standardized Death Rates, Diabetes Mellitus, Per 100,000 in United States", - "statVarKey": [ - "WHO/SA_0000001440" - ], - "title": "Age-Standardized Death Rates, Diabetes Mellitus, Per 100,000 in United States", - "type": "HIGHLIGHT" - } - ] - } - ], - "title": "Age-Standardized Death Rates, Diabetes Mellitus, Per 100,000" - }, { "columns": [ { @@ -143,23 +126,6 @@ "denom": "Count_Person", "title": "Percent of Men That Have Diabetes in Counties of United States" }, - { - "columns": [ - { - "tiles": [ - { - "description": "Diabetes Mellitus, Per 100,000 in United States", - "statVarKey": [ - "WHO/SA_0000001421" - ], - "title": "Diabetes Mellitus, Per 100,000 in United States", - "type": "HIGHLIGHT" - } - ] - } - ], - "title": "Diabetes Mellitus, Per 100,000" - }, { "columns": [ { @@ -204,14 +170,6 @@ "statVar": "Percent_Person_WithDiabetes", "unit": "%" }, - "WHO/SA_0000001421": { - "name": "Diabetes Mellitus, Per 100,000", - "statVar": "WHO/SA_0000001421" - }, - "WHO/SA_0000001440": { - "name": "Age-Standardized Death Rates, Diabetes Mellitus, Per 100,000", - "statVar": "WHO/SA_0000001440" - }, "dc/nh3s4skee5483": { "name": "Percent of Women That Have Diabetes", "statVar": "dc/nh3s4skee5483" diff --git a/server/integration_tests/test_data/fulfillment_api_undata/chart_config.json b/server/integration_tests/test_data/fulfillment_api_undata/chart_config.json index a9fe2503e3..02d82f0110 100644 --- a/server/integration_tests/test_data/fulfillment_api_undata/chart_config.json +++ b/server/integration_tests/test_data/fulfillment_api_undata/chart_config.json @@ -9,169 +9,13 @@ { "tiles": [ { - "description": "Human Development Index Rank in United States of America", - "statVarKey": [ - "who/CCO_2" - ], - "title": "Human Development Index Rank in United States of America", - "type": "HIGHLIGHT" - } - ] - }, - { - "tiles": [ - { - "statVarKey": [ - "who/CCO_2" - ], - "title": "Human Development Index Rank in United States of America", - "type": "LINE" - } - ] - } - ], - "description": "Human development index rank.", - "title": "Human Development Index Rank" - }, - { - "columns": [ - { - "tiles": [ - { - "description": "Mean Hemoglobin Level of Children Aged 6-59 Months in United States of America", - "statVarKey": [ - "who/HEMOGLOBINLEVEL_CHILDREN_MEAN" - ], - "title": "Mean Hemoglobin Level of Children Aged 6-59 Months in United States of America", - "type": "HIGHLIGHT" - } - ] - }, - { - "tiles": [ - { - "statVarKey": [ - "who/HEMOGLOBINLEVEL_CHILDREN_MEAN" - ], - "title": "Mean Hemoglobin Level of Children Aged 6-59 Months in United States of America", - "type": "LINE" - } - ] - } - ], - "description": "Mean hemoglobin level of children aged 6-59 months.", - "title": "Mean Hemoglobin Level of Children Aged 6-59 Months" - }, - { - "columns": [ - { - "tiles": [ - { - "description": "Mean Hemoglobin Level of Non-Pregnant Women (Aged 15-49 Years) in United States of America", - "statVarKey": [ - "who/HEMOGLOBINLEVEL_NONPREGNANT_MEAN" - ], - "title": "Mean Hemoglobin Level of Non-Pregnant Women (Aged 15-49 Years) in United States of America", - "type": "HIGHLIGHT" - } - ] - }, - { - "tiles": [ - { - "statVarKey": [ - "who/HEMOGLOBINLEVEL_NONPREGNANT_MEAN" - ], - "title": "Mean Hemoglobin Level of Non-Pregnant Women (Aged 15-49 Years) in United States of America", - "type": "LINE" - } - ] - } - ], - "description": "Mean hemoglobin level of non-pregnant women (aged 15-49 years).", - "title": "Mean Hemoglobin Level of Non-Pregnant Women (Aged 15-49 Years)" - }, - { - "columns": [ - { - "tiles": [ - { - "description": "Mean Hemoglobin Level of Pregnant Women (Aged 15-49 Years) in United States of America", - "statVarKey": [ - "who/HEMOGLOBINLEVEL_PREGNANT_MEAN" - ], - "title": "Mean Hemoglobin Level of Pregnant Women (Aged 15-49 Years) in United States of America", - "type": "HIGHLIGHT" - } - ] - }, - { - "tiles": [ - { - "statVarKey": [ - "who/HEMOGLOBINLEVEL_PREGNANT_MEAN" - ], - "title": "Mean Hemoglobin Level of Pregnant Women (Aged 15-49 Years) in United States of America", - "type": "LINE" + "type": "PLACE_OVERVIEW" } ] } - ], - "description": "Mean hemoglobin level of pregnant women (aged 15-49 years).", - "title": "Mean Hemoglobin Level of Pregnant Women (Aged 15-49 Years)" - }, - { - "columns": [ - { - "tiles": [ - { - "description": "Mean Hemoglobin Level of Women of Reproductive Age (Aged 15-49 Years) in United States of America", - "statVarKey": [ - "who/HEMOGLOBINLEVEL_REPRODUCTIVEAGE_MEAN" - ], - "title": "Mean Hemoglobin Level of Women of Reproductive Age (Aged 15-49 Years) in United States of America", - "type": "HIGHLIGHT" - } - ] - }, - { - "tiles": [ - { - "statVarKey": [ - "who/HEMOGLOBINLEVEL_REPRODUCTIVEAGE_MEAN" - ], - "title": "Mean Hemoglobin Level of Women of Reproductive Age (Aged 15-49 Years) in United States of America", - "type": "LINE" - } - ] - } - ], - "description": "Mean hemoglobin level of women of reproductive age (aged 15-49 years).", - "title": "Mean Hemoglobin Level of Women of Reproductive Age (Aged 15-49 Years)" - } - ], - "statVarSpec": { - "who/CCO_2": { - "name": "Human development index rank", - "statVar": "who/CCO_2" - }, - "who/HEMOGLOBINLEVEL_CHILDREN_MEAN": { - "name": "Mean hemoglobin level of children aged 6-59 months", - "statVar": "who/HEMOGLOBINLEVEL_CHILDREN_MEAN" - }, - "who/HEMOGLOBINLEVEL_NONPREGNANT_MEAN": { - "name": "Mean hemoglobin level of non-pregnant women (aged 15-49 years)", - "statVar": "who/HEMOGLOBINLEVEL_NONPREGNANT_MEAN" - }, - "who/HEMOGLOBINLEVEL_PREGNANT_MEAN": { - "name": "Mean hemoglobin level of pregnant women (aged 15-49 years)", - "statVar": "who/HEMOGLOBINLEVEL_PREGNANT_MEAN" - }, - "who/HEMOGLOBINLEVEL_REPRODUCTIVEAGE_MEAN": { - "name": "Mean hemoglobin level of women of reproductive age (aged 15-49 years)", - "statVar": "who/HEMOGLOBINLEVEL_REPRODUCTIVEAGE_MEAN" + ] } - } + ] } ], "metadata": { @@ -200,49 +44,19 @@ ], "relatedThings": { "childPlaces": {}, - "childTopics": [ - { - "dcid": "dc/topic/UN_SUB_THEME_14", - "name": "Inequality and social protection", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_SUB_THEME_16", - "name": "Nutrition", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_SUB_THEME_13", - "name": "Poverty", - "types": [ - "Topic" - ] - } - ], + "childTopics": [], "exploreMore": {}, "mainTopics": [ { - "dcid": "dc/topic/UN_THEME_1", - "name": "1: Poverty and food security", + "dcid": "dc/topic/Root", + "name": "Statistics", "types": [ "Topic" ] } ], "parentPlaces": [], - "parentTopics": [ - { - "dcid": "dc/topic/UN", - "name": "12 UN Data Thematic Areas", - "types": [ - "Topic" - ] - } - ], + "parentTopics": [], "peerPlaces": [ { "dcid": "country/BRA", @@ -343,79 +157,11 @@ ] } ], - "peerTopics": [ - { - "dcid": "dc/topic/UN_THEME_2", - "name": "2: Health", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_3", - "name": "3: Children and youth", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_4", - "name": "4: Education and culture", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_5", - "name": "5: Equality and human rights", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_6", - "name": "6: Economic development", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_8", - "name": "8: Drinking water, sanitation and hygiene", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_9", - "name": "9: Climate and the environment", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_10", - "name": "10: Population and demography", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_11", - "name": "11: Disasters and humanitarian action", - "types": [ - "Topic" - ] - }, - { - "dcid": "dc/topic/UN_THEME_12", - "name": "12: Governance and peace", - "types": [ - "Topic" - ] - } - ] + "peerTopics": [] }, - "svSource": "UNKNOWN", - "userMessages": [] + "showForm": true, + "svSource": "UNFULFILLED", + "userMessages": [ + "Sorry, there were no relevant statistics about the topic for United States of America." + ] } \ No newline at end of file diff --git a/server/integration_tests/test_data/international/query_2/chart_config.json b/server/integration_tests/test_data/international/query_2/chart_config.json index 68ae66e253..168f1a2c1b 100644 --- a/server/integration_tests/test_data/international/query_2/chart_config.json +++ b/server/integration_tests/test_data/international/query_2/chart_config.json @@ -327,66 +327,6 @@ ], "title": "Infant Mortality Rate by Gender" }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/CM_01", - "WHO/CM_02", - "WHO/CM_03" - ], - "title": "Child Mortality in China", - "type": "LINE" - } - ] - } - ], - "title": "Child Mortality" - }, - { - "columns": [ - { - "tiles": [ - { - "barTileSpec": { - "maxPlaces": 15, - "maxVariables": 15, - "sort": "DESCENDING" - }, - "comparisonPlaces": [ - "country/CHN" - ], - "statVarKey": [ - "WHO/SA_0000001418_multiple_place_bar_block", - "WHO/SA_0000001419_multiple_place_bar_block", - "WHO/SA_0000001420_multiple_place_bar_block", - "WHO/SA_0000001421_multiple_place_bar_block", - "WHO/SA_0000001422_multiple_place_bar_block", - "WHO/SA_0000001423_multiple_place_bar_block", - "WHO/SA_0000001424_multiple_place_bar_block", - "WHO/SA_0000001425_multiple_place_bar_block", - "WHO/SA_0000001426_multiple_place_bar_block", - "WHO/SA_0000001427_multiple_place_bar_block", - "WHO/SA_0000001429_multiple_place_bar_block", - "WHO/SA_0000001430_multiple_place_bar_block", - "WHO/SA_0000001431_multiple_place_bar_block", - "WHO/SA_0000001432_multiple_place_bar_block", - "WHO/SA_0000001433_multiple_place_bar_block", - "WHO/SA_0000001434_multiple_place_bar_block", - "WHO/SA_0000001435_multiple_place_bar_block", - "WHO/SA_0000001436_multiple_place_bar_block", - "WHO/SA_0000001689_multiple_place_bar_block" - ], - "title": "Disability-Adjusted Life-Years in China (${date})", - "type": "BAR" - } - ] - } - ], - "title": "Disability-Adjusted Life-Years" - }, { "columns": [ { @@ -416,76 +356,6 @@ "footnote": "Includes data from the following sources: estimates by WHO, UNICEF, UNFPA, world bank group and UNDESA/Population division. Geneva: world health organization; 2023.", "title": "Maternal Mortality Ratio" }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/MORT_MATERNALNUM" - ], - "title": "Number of Maternal Deaths in China", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Number of Maternal Deaths in China", - "statVarKey": [ - "WHO/MORT_MATERNALNUM" - ], - "title": "Number of Maternal Deaths in China", - "type": "HIGHLIGHT" - } - ] - } - ], - "title": "Number of Maternal Deaths" - }, - { - "columns": [ - { - "tiles": [ - { - "barTileSpec": { - "maxPlaces": 15, - "maxVariables": 15, - "sort": "DESCENDING" - }, - "comparisonPlaces": [ - "country/CHN" - ], - "statVarKey": [ - "WHO/SA_0000001437_multiple_place_bar_block", - "WHO/SA_0000001438_multiple_place_bar_block", - "WHO/SA_0000001439_multiple_place_bar_block", - "WHO/SA_0000001440_multiple_place_bar_block", - "WHO/SA_0000001441_multiple_place_bar_block", - "WHO/SA_0000001442_multiple_place_bar_block", - "WHO/SA_0000001443_multiple_place_bar_block", - "WHO/SA_0000001444_multiple_place_bar_block", - "WHO/SA_0000001445_multiple_place_bar_block", - "WHO/SA_0000001446_multiple_place_bar_block", - "WHO/SA_0000001448_multiple_place_bar_block", - "WHO/SA_0000001449_multiple_place_bar_block", - "WHO/SA_0000001450_multiple_place_bar_block", - "WHO/SA_0000001451_multiple_place_bar_block", - "WHO/SA_0000001452_multiple_place_bar_block", - "WHO/SA_0000001453_multiple_place_bar_block", - "WHO/SA_0000001454_multiple_place_bar_block", - "WHO/SA_0000001455_multiple_place_bar_block", - "WHO/SA_0000001690_multiple_place_bar_block" - ], - "title": "Mortality Rates by Causes in China (${date})", - "type": "BAR" - } - ] - } - ], - "title": "Mortality Rates by Causes" - }, { "columns": [ { @@ -577,174 +447,6 @@ "name": "Male Life Expectancy", "statVar": "LifeExpectancy_Person_Male" }, - "WHO/CM_01": { - "name": "Number Of Under-Five Deaths", - "statVar": "WHO/CM_01" - }, - "WHO/CM_02": { - "name": "Number Of Infant Deaths", - "statVar": "WHO/CM_02" - }, - "WHO/CM_03": { - "name": "Number Of Neonatal Deaths", - "statVar": "WHO/CM_03" - }, - "WHO/MORT_MATERNALNUM": { - "name": "Number Of Maternal Deaths", - "statVar": "WHO/MORT_MATERNALNUM" - }, - "WHO/SA_0000001418_multiple_place_bar_block": { - "name": "Alcohol Use Disorders, Per 100,000", - "statVar": "WHO/SA_0000001418" - }, - "WHO/SA_0000001419_multiple_place_bar_block": { - "name": "Breast Cancer, Per 100,000", - "statVar": "WHO/SA_0000001419" - }, - "WHO/SA_0000001420_multiple_place_bar_block": { - "name": "Colon And Rectum Cancers, Per 100,000", - "statVar": "WHO/SA_0000001420" - }, - "WHO/SA_0000001421_multiple_place_bar_block": { - "name": "Diabetes Mellitus, Per 100,000", - "statVar": "WHO/SA_0000001421" - }, - "WHO/SA_0000001422_multiple_place_bar_block": { - "name": "Drownings, Per 100,000", - "statVar": "WHO/SA_0000001422" - }, - "WHO/SA_0000001423_multiple_place_bar_block": { - "name": "Falls, Per 100,000", - "statVar": "WHO/SA_0000001423" - }, - "WHO/SA_0000001424_multiple_place_bar_block": { - "name": "Fires, Per 100,000", - "statVar": "WHO/SA_0000001424" - }, - "WHO/SA_0000001425_multiple_place_bar_block": { - "name": "Ischaemic Heart Disease, Per 100,000", - "statVar": "WHO/SA_0000001425" - }, - "WHO/SA_0000001426_multiple_place_bar_block": { - "name": "Liver Cancer, Per 100,000", - "statVar": "WHO/SA_0000001426" - }, - "WHO/SA_0000001427_multiple_place_bar_block": { - "name": "Liver Cirrhosis, Per 100,000", - "statVar": "WHO/SA_0000001427" - }, - "WHO/SA_0000001429_multiple_place_bar_block": { - "name": "Mouth And Oropharynx Cancer, Per 100,000", - "statVar": "WHO/SA_0000001429" - }, - "WHO/SA_0000001430_multiple_place_bar_block": { - "name": "Oesophagus Cancer, Per 100,000", - "statVar": "WHO/SA_0000001430" - }, - "WHO/SA_0000001431_multiple_place_bar_block": { - "name": "Poisoning, Per 100,000", - "statVar": "WHO/SA_0000001431" - }, - "WHO/SA_0000001432_multiple_place_bar_block": { - "name": "Prematurity And Low Birth Rate, Per 100,000", - "statVar": "WHO/SA_0000001432" - }, - "WHO/SA_0000001433_multiple_place_bar_block": { - "name": "Road Traffic Accidents, Per 100,000", - "statVar": "WHO/SA_0000001433" - }, - "WHO/SA_0000001434_multiple_place_bar_block": { - "name": "Self-Inflicted Injury, Per 100,000", - "statVar": "WHO/SA_0000001434" - }, - "WHO/SA_0000001435_multiple_place_bar_block": { - "name": "Other Unintentional Injuries, Per 100,000", - "statVar": "WHO/SA_0000001435" - }, - "WHO/SA_0000001436_multiple_place_bar_block": { - "name": "Violence, Per 100,000", - "statVar": "WHO/SA_0000001436" - }, - "WHO/SA_0000001437_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Alcohol Use Disorders, Per 100,000", - "statVar": "WHO/SA_0000001437" - }, - "WHO/SA_0000001438_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Breast Cancer, Per 100,000", - "statVar": "WHO/SA_0000001438" - }, - "WHO/SA_0000001439_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Colon And Rectum Cancers, Per 100,000", - "statVar": "WHO/SA_0000001439" - }, - "WHO/SA_0000001440_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Diabetes Mellitus, Per 100,000", - "statVar": "WHO/SA_0000001440" - }, - "WHO/SA_0000001441_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Drownings, Per 100,000", - "statVar": "WHO/SA_0000001441" - }, - "WHO/SA_0000001442_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Falls, Per 100,000", - "statVar": "WHO/SA_0000001442" - }, - "WHO/SA_0000001443_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Fires, Per 100,000", - "statVar": "WHO/SA_0000001443" - }, - "WHO/SA_0000001444_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Ischaemic Heart Disease, Per 100,000", - "statVar": "WHO/SA_0000001444" - }, - "WHO/SA_0000001445_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Liver Cancer, Per 100,000", - "statVar": "WHO/SA_0000001445" - }, - "WHO/SA_0000001446_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Liver Cirrhosis, Per 100,000", - "statVar": "WHO/SA_0000001446" - }, - "WHO/SA_0000001448_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Mouth And Oropharynx Cancer, Per 100,000", - "statVar": "WHO/SA_0000001448" - }, - "WHO/SA_0000001449_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Oesophagus Cancer, Per 100,000", - "statVar": "WHO/SA_0000001449" - }, - "WHO/SA_0000001450_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Poisoning, Per 100,000", - "statVar": "WHO/SA_0000001450" - }, - "WHO/SA_0000001451_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Prematurity And Low Birth Rate, Per 100,000", - "statVar": "WHO/SA_0000001451" - }, - "WHO/SA_0000001452_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Road Traffic Accidents, Per 100,000", - "statVar": "WHO/SA_0000001452" - }, - "WHO/SA_0000001453_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Self-Inflicted Injury, Per 100,000", - "statVar": "WHO/SA_0000001453" - }, - "WHO/SA_0000001454_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Other Unintentional Injuries, Per 100,000", - "statVar": "WHO/SA_0000001454" - }, - "WHO/SA_0000001455_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Violence, Per 100,000", - "statVar": "WHO/SA_0000001455" - }, - "WHO/SA_0000001689_multiple_place_bar_block": { - "name": "Cerebrovascular Disease, Per 100,000", - "statVar": "WHO/SA_0000001689" - }, - "WHO/SA_0000001690_multiple_place_bar_block": { - "name": "Age-Standardized Death Rates, Cerebrovascular Disease, Per 100,000", - "statVar": "WHO/SA_0000001690" - }, "sdg/SH_DYN_IMRT.AGE--Y0__SEX--F": { "name": "Infant mortality rate", "statVar": "sdg/SH_DYN_IMRT.AGE--Y0__SEX--F" diff --git a/server/integration_tests/test_data/international/query_4/chart_config.json b/server/integration_tests/test_data/international/query_4/chart_config.json index a7d806f8ec..bfa6c563bb 100644 --- a/server/integration_tests/test_data/international/query_4/chart_config.json +++ b/server/integration_tests/test_data/international/query_4/chart_config.json @@ -460,34 +460,6 @@ } ], "title": "Population" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/CM_02" - ], - "title": "Number of Infant Deaths in Turkey", - "type": "LINE" - } - ] - }, - { - "tiles": [ - { - "description": "Number of Infant Deaths in Turkey", - "statVarKey": [ - "WHO/CM_02" - ], - "title": "Number of Infant Deaths in Turkey", - "type": "HIGHLIGHT" - } - ] - } - ], - "title": "Number of Infant Deaths" } ], "statVarSpec": { @@ -527,10 +499,6 @@ "name": "Population Change", "statVar": "IncrementalCount_Person" }, - "WHO/CM_02": { - "name": "Number Of Infant Deaths", - "statVar": "WHO/CM_02" - }, "sdg/SP_DYN_ADKL.AGE--Y10T14__SEX--F": { "name": "Adolescent birth rate [10 to 14 years old, Female]", "statVar": "sdg/SP_DYN_ADKL.AGE--Y10T14__SEX--F" diff --git a/server/integration_tests/test_data/sdg/query_3/chart_config.json b/server/integration_tests/test_data/sdg/query_3/chart_config.json index 83f1ca00d7..8b20e2d34f 100644 --- a/server/integration_tests/test_data/sdg/query_3/chart_config.json +++ b/server/integration_tests/test_data/sdg/query_3/chart_config.json @@ -235,192 +235,6 @@ "description": "Life expectancy at birth indicates the number of years a newborn infant would live if prevailing patterns of mortality at the time of its birth were to stay the same throughout its life. (1) united nations population division. World population prospects: 2019 revision. (2) census reports and other statistical publications from national statistical offices, (3) eurostat: demographic statistics, (4) united nations statistical division. Population and vital statistics report (various years), (5) u.S. Census bureau: international database, and (6) secretariat of the pacific community: statistics and demography programme.", "title": "Male Life Expectancy in the World" }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/WHS4_117" - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/WHS4_117" - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%) in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/WHS4_128" - ], - "title": "Neonates Protected at Birth Against Neonatal Tetanus (Pab) (%) in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/WHS4_128" - ], - "title": "Neonates Protected at Birth Against Neonatal Tetanus (Pab) (%) in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Neonates Protected at Birth Against Neonatal Tetanus (Pab) (%) in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/WHS4_129" - ], - "title": "Hib (Hib3) Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/WHS4_129" - ], - "title": "Hib (Hib3) Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Hib (Hib3) Immunization Coverage Among 1-Year-Olds (%) in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/M_Est_smk_daily" - ], - "title": "% Daily Tobacco Smokers (Estimate) in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/M_Est_smk_daily" - ], - "title": "% Daily Tobacco Smokers (Estimate) in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "% Daily Tobacco Smokers (Estimate) in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/NCD_BMI_18A" - ], - "title": "% Underweight Among Adults, BMI < 18 in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/NCD_BMI_18A" - ], - "title": "% Underweight Among Adults, BMI < 18 in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "% Underweight Among Adults, BMI < 18 in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/WHS4_543" - ], - "title": "Bcg Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/WHS4_543" - ], - "title": "Bcg Immunization Coverage Among 1-Year-Olds (%) in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Bcg Immunization Coverage Among 1-Year-Olds (%) in the World" - }, { "columns": [ { @@ -481,347 +295,6 @@ ], "footnote": "Includes data from the following sources: estimates by WHO, UNICEF, UNFPA, world bank group and UNDESA/Population division. Geneva: world health organization; 2023.", "title": "Maternal Mortality Ratio in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/MORT_MATERNALNUM" - ], - "title": "Number of Maternal Deaths in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/MORT_MATERNALNUM" - ], - "title": "Number of Maternal Deaths in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Number of Maternal Deaths in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/CM_01" - ], - "title": "Number of Under-Five Deaths in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/CM_01" - ], - "title": "Number of Under-Five Deaths in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Number of Under-Five Deaths in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/CM_02" - ], - "title": "Number of Infant Deaths in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/CM_02" - ], - "title": "Number of Infant Deaths in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Number of Infant Deaths in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/SA_0000001418" - ], - "title": "Alcohol Use Disorders, Per 100,000 in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/SA_0000001418" - ], - "title": "Alcohol Use Disorders, Per 100,000 in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Alcohol Use Disorders, Per 100,000 in the World" - }, - { - "columns": [ - { - "tiles": [ - 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"type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/NTD_4" - ], - "title": "New Cases of Human African Trypanosomiasis in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "New Cases of Human African Trypanosomiasis in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/LBW_PREVALENCE" - ], - "title": "% Low Birth Weight in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/LBW_PREVALENCE" - ], - "title": "% Low Birth Weight in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "% Low Birth Weight in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/NUTOVERWEIGHTPREV" - ], - "title": "% Overweight, Children Under 5 Years in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/NUTOVERWEIGHTPREV" - ], - "title": "% Overweight, Children Under 5 Years in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "% Overweight, Children Under 5 Years in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/GDO_q35" - ], - "title": "Estimated Population-Based Prevalence of Depression in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/GDO_q35" - ], - "title": "Estimated Population-Based Prevalence of Depression in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Estimated Population-Based Prevalence of Depression in the World" - }, - { - "columns": [ - { - "tiles": [ - { - "statVarKey": [ - "WHO/SDG_SH_DTH_RNCOM_ChronicRespiratoryDiseases" - ], - "title": "Non-Communicable Disease Deaths, by Disease & Sex, Chronic Respiratory Diseases in the World (${date})", - "type": "MAP" - } - ] - }, - { - "tiles": [ - { - "rankingTileSpec": { - "rankingCount": 5, - "showHighestLowest": true - }, - "statVarKey": [ - "WHO/SDG_SH_DTH_RNCOM_ChronicRespiratoryDiseases" - ], - "title": "Non-Communicable Disease Deaths, by Disease & Sex, Chronic Respiratory Diseases in the World (${date})", - "type": "RANKING" - } - ] - } - ], - "title": "Non-Communicable Disease Deaths, by Disease & Sex, Chronic Respiratory Diseases in the World" } ], "statVarSpec": { @@ -845,74 +318,6 @@ "name": "Male Life Expectancy", "statVar": "LifeExpectancy_Person_Male" }, - "WHO/CM_01": { - "name": "Number Of Under-Five Deaths", - "statVar": "WHO/CM_01" - }, - "WHO/CM_02": { - "name": "Number Of Infant Deaths", - "statVar": "WHO/CM_02" - }, - "WHO/GDO_q35": { - "name": "Estimated Population-Based Prevalence Of Depression", - "statVar": "WHO/GDO_q35" - }, - "WHO/LBW_PREVALENCE": { - "name": "% Low Birth Weight", - "statVar": "WHO/LBW_PREVALENCE" - }, - "WHO/MORT_MATERNALNUM": { - "name": "Number Of Maternal Deaths", - "statVar": "WHO/MORT_MATERNALNUM" - }, - "WHO/M_Est_smk_daily": { - "name": "% Daily Tobacco Smokers (Estimate)", - "statVar": "WHO/M_Est_smk_daily" - }, - "WHO/NCD_BMI_18A": { - "name": "% Underweight Among Adults, BMI < 18", - "statVar": "WHO/NCD_BMI_18A" - }, - "WHO/NTD_1": { - "name": "New Cases Of Buruli Ulcer", - "statVar": "WHO/NTD_1" - }, - "WHO/NTD_4": { - "name": "New Cases Of Human African Trypanosomiasis", - "statVar": "WHO/NTD_4" - }, - "WHO/NUTOVERWEIGHTPREV": { - "name": "% Overweight, Children Under 5 Years", - "statVar": "WHO/NUTOVERWEIGHTPREV" - }, - "WHO/SA_0000001418": { - "name": "Alcohol Use Disorders, Per 100,000", - "statVar": "WHO/SA_0000001418" - }, - "WHO/SA_0000001419": { - "name": "Breast Cancer, Per 100,000", - "statVar": "WHO/SA_0000001419" - }, - "WHO/SDG_SH_DTH_RNCOM_ChronicRespiratoryDiseases": { - "name": "Non-Communicable Disease Deaths, By Disease & Sex, Chronic Respiratory Diseases", - "statVar": "WHO/SDG_SH_DTH_RNCOM_ChronicRespiratoryDiseases" - }, - "WHO/WHS4_117": { - "name": "Hepatitis B (Hepb3) Immunization Coverage Among 1-Year-Olds (%)", - "statVar": "WHO/WHS4_117" - }, - "WHO/WHS4_128": { - "name": "Neonates Protected At Birth Against Neonatal Tetanus (Pab) (%)", - "statVar": "WHO/WHS4_128" - }, - "WHO/WHS4_129": { - "name": "Hib (Hib3) Immunization Coverage Among 1-Year-Olds (%)", - "statVar": "WHO/WHS4_129" - }, - "WHO/WHS4_543": { - "name": "Bcg Immunization Coverage Among 1-Year-Olds (%)", - "statVar": "WHO/WHS4_543" - }, "sdg/SH_STA_MORT.SEX--F": { "name": "Maternal mortality ratio", "statVar": "sdg/SH_STA_MORT.SEX--F" From d07ffd86b2131b484b4ba1804daf94cb355a96eb Mon Sep 17 00:00:00 2001 From: chejennifer <69875368+chejennifer@users.noreply.github.com> Date: Fri, 8 Nov 2024 20:01:22 +0000 Subject: [PATCH 10/11] fix sanity test (#4725) looks like the class name for topic items got changed in this PR causing sanity tests to fail: https://github.com/datacommonsorg/website/pull/4673/files#diff-37059329da755a92aa218821e795bf1cb89ad26682ceb8f6d5dddc84a49bb645L43 --- server/webdriver/tests/standalone/sanity.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/server/webdriver/tests/standalone/sanity.py b/server/webdriver/tests/standalone/sanity.py index ef0dc2d4e5..e0d9514356 100644 --- a/server/webdriver/tests/standalone/sanity.py +++ b/server/webdriver/tests/standalone/sanity.py @@ -145,7 +145,7 @@ def home(self, page: WebPage): time.sleep(1) # topic items - topic_items = find_elems(self.driver, By.CLASS_NAME, "topic-item") + topic_items = find_elems(self.driver, By.CLASS_NAME, "chip-item") if topic_items is None or len(topic_items) == 0: self.add_result(fail_result(page, start, "No topic items.")) return From 38fcae8decae57d066515236b14742307e733572 Mon Sep 17 00:00:00 2001 From: Hannah Pho Date: Fri, 8 Nov 2024 14:57:54 -0500 Subject: [PATCH 11/11] Make stable branch commit check clearer --- ...its-in-master.yml => release-branch-checks.yml} | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) rename .github/workflows/{all-commits-in-master.yml => release-branch-checks.yml} (58%) diff --git a/.github/workflows/all-commits-in-master.yml b/.github/workflows/release-branch-checks.yml similarity index 58% rename from .github/workflows/all-commits-in-master.yml rename to .github/workflows/release-branch-checks.yml index 8ff834082a..1baef5e409 100644 --- a/.github/workflows/all-commits-in-master.yml +++ b/.github/workflows/release-branch-checks.yml @@ -1,14 +1,14 @@ -name: all-commits-in-master +name: Release branch checks on: pull_request: branches: [ "customdc_stable" ] jobs: - check_commits: + verify_all_commits_are_already_in_master: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: # Fetch all history for accurate comparison fetch-depth: 0 @@ -16,7 +16,7 @@ jobs: ref: ${{ github.event.pull_request.head.ref }} repository: ${{ github.event.pull_request.head.repo.full_name }} - - name: Check if commits exist in master + - name: Verify that all commits are already in the master branch run: | git remote add dc https://github.com/datacommonsorg/website.git git fetch dc @@ -26,8 +26,14 @@ jobs: MISSING_COMMITS=$(git log --pretty="%H - %s" $MASTER_BRANCH..HEAD --) if [[ -n "$MISSING_COMMITS" ]]; then + echo "" echo "ERROR: The following commits are not present in $MASTER_BRANCH:" + echo "" echo "$MISSING_COMMITS" + echo "" + echo "PRs to release branches should only contain commits that are already in master." + echo "To fix this PR, reset its branch locally to a commit at or behind https://github.com/datacommonsorg/website/commits/master/ and then force-push it." + echo "Note that a release branch PR should be based on master and not the previous version of the release branch, which contains merge commits." exit 1 fi