From 35c27b246438a76f81ad8c8882c3d10f513bcb40 Mon Sep 17 00:00:00 2001 From: Samantha Piekos Date: Wed, 29 Nov 2023 22:22:41 -0800 Subject: [PATCH] Update format_disease_jensen_lab.py update output csv file names --- .../diseasesAtJensenLab/format_disease_jensen_lab.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/scripts/biomedical/diseasesAtJensenLab/format_disease_jensen_lab.py b/scripts/biomedical/diseasesAtJensenLab/format_disease_jensen_lab.py index 0af28ee3a3..a64c3339bd 100644 --- a/scripts/biomedical/diseasesAtJensenLab/format_disease_jensen_lab.py +++ b/scripts/biomedical/diseasesAtJensenLab/format_disease_jensen_lab.py @@ -178,9 +178,9 @@ def wrapper_function(df_textmining, df_manual, df_experiment): df_txt, df_txt_rna = format_genes_textmining(df_textmining) df_txt1, df_txt_rna1 = format_genes_knowledge(df_manual) df_txt2, df_txt_rna2 = format_genes_experiment(df_experiment) - df_txt[0:4003718].to_csv('codingGenes-textmining-1.csv', doublequote=False, escapechar='\\') - df_txt[4003719:].to_csv('codingGenes-textmining-2.csv', doublequote=False, escapechar='\\') - df_txt_rna.to_csv('nonCodingGenes-textmining.csv', doublequote=False, escapechar='\\') + df_txt[0:4003718].to_csv('codingGenes-textMining-1.csv', doublequote=False, escapechar='\\') + df_txt[4003719:].to_csv('codingGenes-textMining-2.csv', doublequote=False, escapechar='\\') + df_txt_rna.to_csv('nonCodingGenes-textMining.csv', doublequote=False, escapechar='\\') df_txt1.to_csv('codingGenes-manual.csv', doublequote=False, escapechar='\\') df_txt_rna1.to_csv('nonCodingGenes-manual.csv', doublequote=False, escapechar='\\') df_txt2.to_csv('experiment.csv', doublequote=False, escapechar='\\')