mkdocs.yml

site_name: Bulker
site_logo: img/bulker_logo_gray.svg
site_url: http://bulker.databio.org/
repo_url: http://github.com/databio/bulker
pypi_name: bulker
paper_link: http://dx.doi.org/10.31219/osf.io/natsj 

nav:
  - Getting Started: 
    - Introduction: README.md
    - Motivation: motivation.md
    - Install and configure: install.md
    - "Tutorial": tutorial.md
    - PEPPRO pipeline tutorial: peppro.md
    - Refgenie tutorial: refgenie_tutorial.md
    - Biobase tutorial: biobase.md
  - How-to Guides:
    - Create strict environments: strict.md
    - Write a manifest: manifest.md
    - Inspect a crate: inspect.md
    - Import crates: import.md
    - Start an exploratory shell: shell.md
    - Use bulker in a multi-user environment: multi_user_environment.md
    - Host- and tool-specific settings: settings.md
    - Custom prompts: custom_prompts.md
    - Use a bulker registry: registry.md
    - Use images with entrypoints: entrypoint.md
    - Disable user or network map: advanced_templates.md
    - Enable bash autocompletion: autocomplete.md
  - Reference:
    - Tips: tips.md
    - Support: https://github.com/databio/bulker/issues
    - Changelog: changelog.md

theme: databio

plugins:
  - databio:
      autodoc_build: "docs/autodoc_build"
      no_top_level: true
  - search