Fixed LSFCluster stdin job setup not being run in a shell (#661) #536
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| name: CI | |
| on: [push, pull_request] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| jobqueue: ["htcondor", "pbs", "sge", "slurm", "none"] | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v2 | |
| - name: Setup Empty Conda Environment with Mamba | |
| if: matrix.jobqueue == 'none' | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| channels: conda-forge | |
| mamba-version: "*" | |
| activate-environment: dask-jobqueue | |
| auto-activate-base: false | |
| - name: Setup dask-jobqueue conda environment | |
| if: matrix.jobqueue == 'none' | |
| run: | | |
| mamba env update -f ci/environment.yml | |
| mamba list | |
| - name: Setup Job queuing system | |
| if: matrix.jobqueue != 'none' | |
| run: | | |
| cp ci/environment.yml ci/${{ matrix.jobqueue }}/environment.yml | |
| source ci/${{ matrix.jobqueue }}.sh | |
| jobqueue_before_install | |
| - name: Install dask-jobqueue | |
| run: | | |
| source ci/${{ matrix.jobqueue }}.sh | |
| jobqueue_install | |
| - name: Test | |
| run: | | |
| source ci/${{ matrix.jobqueue }}.sh | |
| jobqueue_script | |
| - name: Cleanup | |
| if: always() | |
| run: | | |
| source ci/${{ matrix.jobqueue }}.sh | |
| jobqueue_after_script | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v3 | |
| - uses: pre-commit/[email protected] |