Updated analysis: transcriptomic-dimension-reduction for OT subtyping

[kgaonkar6]

What analysis module should be updated and why?

Update transcriptomic-dimension-reduction for OT filename updates

What changes need to be made? Please provide enough detail for another participant to make the update.

• We will first need to generate the files as noted in data release v7 #92 (comment)

gene-expression-rsem-fpkm.rds
gene-expression-kallisto.rds

And then update bash script to the new filenames

• Change each occurrence ofpbta-histologies.tsv to `histologies.tsv

What input data should be used? Which data were used in the version being updated?

v7
gene-expression-rsem-fpkm.rds
gene-expression-kallisto.rds

When do you expect the revised analysis will be completed?

TBD

Who will complete the updated analysis?

[kgaonkar6]

Closing this to be removed from subtyping since it's only used in a QC plot in molecular-subtyping-HGG.