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Updated analysis: LGG subtyping to take in new H3 gene symbols for GENCODE v39 update #488

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jharenza opened this issue Jan 10, 2023 · 1 comment
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Updated analysis: LGG subtyping to take in new H3 gene symbols for GENCODE v39 update #488

jharenza opened this issue Jan 10, 2023 · 1 comment
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@jharenza
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What analysis module should be updated and why?

molecular subtyping LGAT

What changes need to be made? Please provide enough detail for another participant to make the update.

What input data should be used? Which data were used in the version being updated?

Update H3 gene symbols:

H3-3A <- H3F3A
H3C2 <- HIST1H3B
H3C3 <- HIST1H3C
H3C14 <- HIST2H3C

When do you expect the revised analysis will be completed?

With v12 release in staggered subtyping PRs

Who will complete the updated analysis?

@jharenza or @ewafula
@ewafula ewafula mentioned this issue Jan 13, 2023
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@jharenza jharenza added the v12 label Feb 13, 2023
@ewafula ewafula mentioned this issue Mar 3, 2023
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This was referenced Apr 13, 2023
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@jharenza
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jharenza commented May 1, 2023

Closed with d3b-center/OpenPedCan-analysis#321

@jharenza jharenza closed this as completed May 1, 2023
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