diff --git a/cerebra/protein_variant_predictor.py b/cerebra/protein_variant_predictor.py index 99fc7f5..25fa23a 100644 --- a/cerebra/protein_variant_predictor.py +++ b/cerebra/protein_variant_predictor.py @@ -1,6 +1,5 @@ from collections import defaultdict, namedtuple from itertools import tee -import re from Bio import Alphabet from Bio.Seq import Seq # need to clean this up @@ -165,7 +164,7 @@ def predict_for_vcf_record(self, vcf_record): ref = vcf_record.REF for alt in vcf_record.ALT: - + # Create a GenomePosition representing the range affected by the # ALT sequence. affected_pos = record_pos.shifted_by(