diff --git a/DESCRIPTION b/DESCRIPTION index 5ddb495..fc52d79 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Encoding: UTF-8 Package: cytominer Type: Package Title: Methods for Image-Based Cell Profiling -Version: 0.2.1.9000 +Version: 0.2.2 Authors@R: c(person("Tim", "Becker", email = "tbecker@broadinstitute.org", role = "aut"), person("Allen", "Goodman", email = "allen.goodman@icloud.com", role = "aut"), person("Claire", "McQuin", email = "mcquin@broadinstitute.org", role = "aut"), diff --git a/NEWS.md b/NEWS.md index 1dca1ad..b1c1163 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,7 @@ -# cytominer 0.2.1.9000 +# cytominer 0.2.2 + +- Maintenance release in preparation for `dplyr 1.0.0` (#146) +- Improve tests and change robustize behavior (#141) # cytominer 0.2.1 diff --git a/cran-comments.md b/cran-comments.md index 064e9c2..360e96f 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,22 +1,11 @@ -## Note about two consecutive submissions -I mistakenly submitted to CRAN without saving cran-comments.md. -I am thus resubmitting, but have bumped up the version because I get the message -"The Server already contains a file with that name/version, please increase version number" - ## Test environments -* local OS X install, R 3.6.1 -* Ubuntu 16.04.6 LTS (on travis-ci), R 3.6.2 +* local OS X install, R 3.6.3 +* Ubuntu 16.04.6 LTS (on travis-ci), R 4.0.0 * win-builder (release and devel) ## R CMD check results -There were no ERRORs or WARNINGs or NOTEs for OS X and ubuntu. - -There is 1 NOTE on winbuild: +There were no ERRORs or WARNINGs or NOTEs for OS X, ubuntu, and winbuild. -- *New submission*: Because package was archived on CRAN -- *Misspelling*: Possibly mis-spelled words in DESCRIPTION: Caicedo (18:18, 19:27) -- I confirm no typo here -- *CRAN repository db overrides*: X-CRAN-Comment: Archived on 2019-05-08 as check problems were not corrected in time -- Correct. I just recovered from the shock of being bumped off CRAN. - ## Downstream dependencies There are currently no downstream dependencies for this package. diff --git a/docs/404.html b/docs/404.html index 3a19e6e..7692ec8 100644 --- a/docs/404.html +++ b/docs/404.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html index b6d72f6..44b7661 100644 --- a/docs/CONTRIBUTING.html +++ b/docs/CONTRIBUTING.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 7223cae..3adc6b9 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/LICENSE.html b/docs/LICENSE.html index dbf5165..7af925d 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/articles/cytominer-pipeline.html b/docs/articles/cytominer-pipeline.html index e482976..dbb157a 100644 --- a/docs/articles/cytominer-pipeline.html +++ b/docs/articles/cytominer-pipeline.html @@ -31,7 +31,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/articles/index.html b/docs/articles/index.html index 48c3128..658afdc 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/authors.html b/docs/authors.html index 3ec4670..74c9163 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/index.html b/docs/index.html index 09ffaa2..a37625e 100644 --- a/docs/index.html +++ b/docs/index.html @@ -38,7 +38,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/news/index.html b/docs/news/index.html index 6e1d63a..a2f3f83 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 @@ -126,10 +126,14 @@

Changelog

Source: NEWS.md -
-

-cytominer 0.2.1.9000 Unreleased +
+

+cytominer 0.2.2 Unreleased

+
    +
  • Maintenance release in preparation for dplyr 1.0.0 (#146)
    • +
  • Improve tests and change robustize behavior (#141)
    • +

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index c9a7117..7f1f80d 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 1.5.0 pkgdown_sha: ~ articles: cytominer-pipeline: cytominer-pipeline.html -last_built: 2020-05-08T23:08Z +last_built: 2020-05-09T03:37Z diff --git a/docs/reference/aggregate.html b/docs/reference/aggregate.html index f9aa26f..1615fd8 100644 --- a/docs/reference/aggregate.html +++ b/docs/reference/aggregate.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2

diff --git a/docs/reference/correlation_threshold.html b/docs/reference/correlation_threshold.html index 78e04ac..4615127 100644 --- a/docs/reference/correlation_threshold.html +++ b/docs/reference/correlation_threshold.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2

diff --git a/docs/reference/count_na_rows.html b/docs/reference/count_na_rows.html index 4b7e493..b397e63 100644 --- a/docs/reference/count_na_rows.html +++ b/docs/reference/count_na_rows.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/covariance.html b/docs/reference/covariance.html index 9bc2922..a41aa87 100644 --- a/docs/reference/covariance.html +++ b/docs/reference/covariance.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/drop_na_columns.html b/docs/reference/drop_na_columns.html index a3a1da0..c65f12c 100644 --- a/docs/reference/drop_na_columns.html +++ b/docs/reference/drop_na_columns.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/drop_na_rows.html b/docs/reference/drop_na_rows.html index 7688263..d764e4c 100644 --- a/docs/reference/drop_na_rows.html +++ b/docs/reference/drop_na_rows.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/extract_subpopulations.html b/docs/reference/extract_subpopulations.html index 7d9270f..5897f6e 100644 --- a/docs/reference/extract_subpopulations.html +++ b/docs/reference/extract_subpopulations.html @@ -74,7 +74,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/generalized_log.html b/docs/reference/generalized_log.html index 98c5770..727d8f4 100644 --- a/docs/reference/generalized_log.html +++ b/docs/reference/generalized_log.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/generate_component_matrix.html b/docs/reference/generate_component_matrix.html index 60a32ca..c04c5fe 100644 --- a/docs/reference/generate_component_matrix.html +++ b/docs/reference/generate_component_matrix.html @@ -75,7 +75,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/index.html b/docs/reference/index.html index b47ca64..f18cbdf 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -71,7 +71,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/normalize.html b/docs/reference/normalize.html index 946ffc1..1a901b4 100644 --- a/docs/reference/normalize.html +++ b/docs/reference/normalize.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/replicate_correlation.html b/docs/reference/replicate_correlation.html index f24ba56..56ece58 100644 --- a/docs/reference/replicate_correlation.html +++ b/docs/reference/replicate_correlation.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/sparse_random_projection.html b/docs/reference/sparse_random_projection.html index 53902c1..65e74b0 100644 --- a/docs/reference/sparse_random_projection.html +++ b/docs/reference/sparse_random_projection.html @@ -74,7 +74,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/svd_entropy.html b/docs/reference/svd_entropy.html index 0b4ac4f..39e7a07 100644 --- a/docs/reference/svd_entropy.html +++ b/docs/reference/svd_entropy.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/transform.html b/docs/reference/transform.html index 2612b59..5863f04 100644 --- a/docs/reference/transform.html +++ b/docs/reference/transform.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/variable_importance.html b/docs/reference/variable_importance.html index 309318b..52a6bcb 100644 --- a/docs/reference/variable_importance.html +++ b/docs/reference/variable_importance.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/variable_select.html b/docs/reference/variable_select.html index acd7925..093e7ba 100644 --- a/docs/reference/variable_select.html +++ b/docs/reference/variable_select.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/variance_threshold.html b/docs/reference/variance_threshold.html index d438e99..15a1590 100644 --- a/docs/reference/variance_threshold.html +++ b/docs/reference/variance_threshold.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2 diff --git a/docs/reference/whiten.html b/docs/reference/whiten.html index 129eed4..d4828bc 100644 --- a/docs/reference/whiten.html +++ b/docs/reference/whiten.html @@ -72,7 +72,7 @@ cytominer - 0.2.1.9000 + 0.2.2