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Gene expression analysis methods to implement #44

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5 of 8 tasks
assaron opened this issue Jul 12, 2017 · 2 comments
Open
5 of 8 tasks

Gene expression analysis methods to implement #44

assaron opened this issue Jul 12, 2017 · 2 comments
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@assaron
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assaron commented Jul 12, 2017 •
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  • Gene set enrichment with fgsea.
  • Phenotype prediction (with phenopredict?).
  • Differential expression with limma and proper design matrix.
  • Differential expression with DESeq2.
  • Export to Shiny GAM.
  • Export to Enrichr.
  • WGCNA clustering.
  • Survival analysis.
@assaron assaron added todo and removed enhancement labels Jul 25, 2017
@vlakam
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vlakam commented Dec 1, 2017

Export to Shiny GAM #72 && ctlab/phantasus.js#38

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vlakam commented Dec 31, 2017

Export to Enrichr ctlab/phantasus.js#44

@vlakam vlakam mentioned this issue Jul 30, 2019
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