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GSEA plot badly handles empty values #153

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assaron opened this issue Feb 13, 2020 · 0 comments

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bug

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assaron commented Feb 13, 2020

Open a dataset with a row of zeroes.
Do a marker selection/signal to noise ratio. Some of the genes will have empty values (because of division by zero).
Select some genes and do GSEA plot.

GSEA plot fails because fgsea can't handle NAs in stats vector

assaron added the bug label

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