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Hello, I have been having trouble getting around the jpeg device call when doing calculations with your REMBRANDTS (the server does not display the device) and reporting an error: “Error in jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, : unable to start device 'jpeg'In addition: Warning message: In jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, : cairo error 'invalid value (typically too big) for the size of the input (surface, pattern, et>Execution halted”
The details are as follows:
input command:
bash ./REMBRANDTS.sh mRNA_stability metadata.list / 0.99 linear
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘Biobase’
The following object is masked from ‘package:MatrixGenerics’:
rowMedians
The following objects are masked from ‘package:matrixStats’:
anyMissing, rowMedians
Attaching package: ‘gplots’
The following object is masked from ‘package:IRanges’:
space
The following object is masked from ‘package:S4Vectors’:
space
The following object is masked from ‘package:stats’:
lowess
Error in jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, :
unable to start device 'jpeg'
In addition: Warning message:
In jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, :
cairo error 'invalid value (typically too big) for the size of the input (surface, pattern, etc.)'
Execution halted
Attaching package: ‘gplots’
The following object is masked from ‘package:stats’:
lowess
Error in file(file, "rt") : cannot open the connection
Calls: read.csv -> read.table -> file
In addition: Warning message:
In file(file, "rt") :
cannot open file './tmp/mRNA_stability/vsd_normalized.intronic.all.centered.mx.txt': No such file or directory
Execution halted
Hope to get your help, thank you
The text was updated successfully, but these errors were encountered:
Hello, I have been having trouble getting around the jpeg device call when doing calculations with your REMBRANDTS (the server does not display the device) and reporting an error: “Error in jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, : unable to start device 'jpeg'In addition: Warning message: In jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, : cairo error 'invalid value (typically too big) for the size of the input (surface, pattern, et>Execution halted”
The details are as follows:
input command:
bash ./REMBRANDTS.sh mRNA_stability metadata.list / 0.99 linear
Complete error log:
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
The following objects are masked from ‘package:base’:
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:utils’:
The following objects are masked from ‘package:base’:
Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: ‘MatrixGenerics’
The following objects are masked from ‘package:matrixStats’:
Loading required package: Biobase
Welcome to Bioconductor
Attaching package: ‘Biobase’
The following object is masked from ‘package:MatrixGenerics’:
The following objects are masked from ‘package:matrixStats’:
Attaching package: ‘gplots’
The following object is masked from ‘package:IRanges’:
The following object is masked from ‘package:S4Vectors’:
The following object is masked from ‘package:stats’:
Error in jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, :
unable to start device 'jpeg'
In addition: Warning message:
In jpeg(file = paste(outputFolder, "/vsd_normalized.", readType, :
cairo error 'invalid value (typically too big) for the size of the input (surface, pattern, etc.)'
Execution halted
Attaching package: ‘gplots’
The following object is masked from ‘package:stats’:
Error in file(file, "rt") : cannot open the connection
Calls: read.csv -> read.table -> file
In addition: Warning message:
In file(file, "rt") :
cannot open file './tmp/mRNA_stability/vsd_normalized.intronic.all.centered.mx.txt': No such file or directory
Execution halted
Hope to get your help, thank you
The text was updated successfully, but these errors were encountered: