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MWERalign

If you are using it, please cite :

@inproceedings{matusov2005evaluating,
  title={Evaluating machine translation output with automatic sentence segmentation.},
  author={Matusov, Evgeny and Leusch, Gregor and Bender, Oliver and Ney, Hermann},
  booktitle={IWSLT 2005},
  pages={138--144},
  year={2005}
}