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fix create ROI worfklow in octave #1283

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Remi-Gau opened this issue Jul 10, 2024 · 1 comment · Fixed by #1285
Closed

fix create ROI worfklow in octave #1283

Remi-Gau opened this issue Jul 10, 2024 · 1 comment · Fixed by #1285
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@Remi-Gau
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Remi-Gau commented Jul 10, 2024

See

moxunit_throw_test_skipped_exception('Need bug fix in CPP ROI extractRoiFromAtlas.');

if: undefined value used in conditional expression
 Error  occurred:
        - Error in validate_arg
                line 533 in /usr/share/octave/6.4.0/m/miscellaneous/inputParser.m
        - Error in parse
                line 404 in /usr/share/octave/6.4.0/m/miscellaneous/inputParser.m
        - Error in extractRoiFromAtlas
                line 46 in /home/remi/github/cpp-lln-lab/bidspm/lib/CPP_ROI/src/atlas/extractRoiFromAtlas.m
        - Error in bidsCreateROI
                line 47 in /home/remi/github/cpp-lln-lab/bidspm/src/workflows/roi/bidsCreateROI.m
        - Error in cliCreateRoi
                line 31 in /home/remi/github/cpp-lln-lab/bidspm/src/cli/cliCreateRoi.m
        - Error in bidspm>executeAction
                line 74 in /home/remi/github/cpp-lln-lab/bidspm/bidspm.m
        - Error in bidspm
                line 26 in /home/remi/github/cpp-lln-lab/bidspm/bidspm.m
@Remi-Gau
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also when used with the python CLI, it just dumps its output in the current directory no matter what output was given.

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