[BUG] Analysis level dataset is not passed on to bidspm function

[monique2208]

Is there an existing issue for this?

• I have searched the existing issues

Operating system

• Linux
• Mac
• Windows

Operating system version

No response

SPM 12 version

• 7771
• 7487
• 7219

Platform

• MATLAB
• Octave

Platform version

No response

bidspm version

v3.1.0

bidspm branch / commit number

apptainer run --no-mount bind-paths --cleanenv --bindds003717:/bids /home/mdenissen/containers/bidspm_current.sif /bids /bids dataset --action stats --task SESS06 --model /bids/derivatives/models/model-defaultSESS06_smdl.json --preproc_dir /bids/derivatives/bidspm-preproc --space MNI152NLin2009cAsym --skip_validation

Expected Behavior

Run dataset level from command line

BIDS stats model

No response

Current Behavior & Error message

There are no errors, but I am still running subject level:

bidspm('/bids', ...
                         '/bids', ...
                         'subject', ...
                         'action', 'stats', ...
                         'verbosity', 2, ...
                         'space', { 'MNI152NLin2009cAsym' }, ...
                         'fwhm', 6.0, ...
                         'skip_validation', true, ...
                         'preproc_dir', '/bids/derivatives/bidspm-preproc', ...
                         'model_file', '/bids/derivatives/models/model-defaultSESS06_smdl.json');

Anything else?

The command seems ignored explicitly, only the default model action takes the dataset level into account.

bidspm/src/bidspm.py

Line 226 in a8a61d6

cmd = append_main_cmd(cmd=cmd, analysis_level="subject", action=action)

Is this intentional?

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