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Belgian BA.2 + 9866C sublineage with S:E111Q [200 seq, 1% in Belgium] #537

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corneliusroemer opened this issue Apr 8, 2022 · 1 comment
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not accepted A proposal for a new lineage has not been accepted

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@corneliusroemer
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Belgian BA.2 + 9866C sublineage with S:E111Q [200 seq, 1% in Belgium]

Earliest detection was in Rwanda end of last year. It was only spotted in Europe a month later. So this lineage may be common in Rwanda and connected countries. Interestingly, it's appeared in a number of European countries suggesting multiple introductions.

image

https://cov-spectrum.org/explore/Europe/AllSamples/Past6M/variants?aaMutations=S%3AE1111Q&nucMutations=9866C&pangoLineage=BA.2*&aaMutations1=S%3AE1111Q&nucMutations1=9866C&pangoLineage1=BA.2*&

image

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1107b_cb300.json?branchLabel=Spike%20mutations&label=nuc%20mutations:G24893C

@corneliusroemer corneliusroemer added recommended Recommended for designation by pango team member accepted A proposal for a new lineage has been accepted and will be designated. and removed recommended Recommended for designation by pango team member labels Apr 9, 2022
@chrisruis
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Thanks @corneliusroemer This is the UShER tree for this clade coloured by country:
issue_537_clade

There doesn't seem to be a clear epidemiological event associated with this clade so we haven't designated this at this point

@chrisruis chrisruis added not accepted A proposal for a new lineage has not been accepted and removed accepted A proposal for a new lineage has been accepted and will be designated. labels Apr 19, 2022
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