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LF.3.1 with S:P>L1143F in USA (42) #2669

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FedeGueli opened this issue Jun 28, 2024 · 2 comments
Closed

LF.3.1 with S:P>L1143F in USA (42) #2669

FedeGueli opened this issue Jun 28, 2024 · 2 comments

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@FedeGueli
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@ryhisner spotted a big upload of this sublineage from Colorado yesterday i was wrongly tracking this as it was already LF.3.1.X
Better proporosing here (originally in sars-cov-2-variants/lineage-proposals#1558)
LF.3.1 ( S:V>H445P) > C13860T > C10894T, C18888T, C20628T, S:P>L1143F ( C24989T)
Query: C10894T, C18888T,T3565C
Samples: 42
Countries: USA mainly Colorado
Tree (by Ryan)
Screenshot 2024-06-28 alle 11 21 23
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_43ad9_e2c9f0.json
IDs: EPI_ISL_19101709, EPI_ISL_19168073, EPI_ISL_19175945,
EPI_ISL_19182879, EPI_ISL_19182909, EPI_ISL_19185752,
EPI_ISL_19188815, EPI_ISL_19188998, EPI_ISL_19191292,
EPI_ISL_19191821, EPI_ISL_19191823, EPI_ISL_19193242,
EPI_ISL_19193258, EPI_ISL_19193296, EPI_ISL_19193311,
EPI_ISL_19193369, EPI_ISL_19202814, EPI_ISL_19209647,
EPI_ISL_19210857, EPI_ISL_19213583, EPI_ISL_19214478,
EPI_ISL_19214480, EPI_ISL_19216263, EPI_ISL_19219859,
EPI_ISL_19219868-19219870, EPI_ISL_19219877-19219881, EPI_ISL_19219883,
EPI_ISL_19219885-19219890, EPI_ISL_19219894-19219895, EPI_ISL_19219900,

@xz-keg
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xz-keg commented Jun 29, 2024

Designated LF.3.1.1

@FedeGueli
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Designated LF.3.1.1 via b0a4a61

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