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JN.1+S:F456L with C28603T branch (267 seqs) #2641

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DailyCovidCases opened this issue Jun 5, 2024 · 4 comments
Closed

JN.1+S:F456L with C28603T branch (267 seqs) #2641

DailyCovidCases opened this issue Jun 5, 2024 · 4 comments

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@DailyCovidCases
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From branch 57 of sars-cov-2-variants/lineage-proposals#1253
JN.1+C28603T+S:F456L
Query: T22928C, C28603T, T3565C,-17334,-T565A
No. of seqs: 58 (Australia 4 Canada 4 Chile 1 China 9 Denmark 1 Franch 3 Hong Kong 1 Japan 2 New Zealand 1 Singapore 2 South Korea 3 Spain 4 Sweden 1 UK 14 USA 8)
First: EPI_ISL_18937990, 2024-1-30
Latest: EPI_ISL_19167477, 2024-5-20
usher
Screenshot (105)
@FedeGueli
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i find 27 with T22928C, C28603T, T3565C,-17334,-T565A

@FedeGueli FedeGueli mentioned this issue Jun 7, 2024
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@DailyCovidCases DailyCovidCases changed the title JN.1+S:F456L with C28603T branch (58 seqs, 15 countries) JN.1+S:F456L with C28603T branch (43 seqs, 11 countries) Jul 2, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1+S:F456L with C28603T branch (43 seqs, 11 countries) JN.1+S:F456L with C28603T branch (51 seqs, 11 countries) Jul 4, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1+S:F456L with C28603T branch (51 seqs, 11 countries) JN.1+S:F456L with C28603T branch (68 seqs) Jul 10, 2024
@DailyCovidCases
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DailyCovidCases commented Jul 10, 2024 •
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Tracked in tracker57

@FedeGueli
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83 now

@DailyCovidCases DailyCovidCases changed the title JN.1+S:F456L with C28603T branch (68 seqs) JN.1+S:F456L with C28603T branch (86 seqs) Jul 16, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1+S:F456L with C28603T branch (86 seqs) JN.1+S:F456L with C28603T branch (130 seqs, not monophyletic) Jul 26, 2024
@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Aug 3, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1+S:F456L with C28603T branch (130 seqs, not monophyletic) JN.1+S:F456L with C28603T branch (267 seqs) Aug 25, 2024
@FedeGueli
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not monophyletic please close this:
Screenshot 2024-09-05 alle 15 30 24
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_17d8a_9b1cd0.json?f_userOrOld=uploaded%20sample&label=id:node_6949438

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Sep 5, 2024
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@FedeGueli @DailyCovidCases