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JN.1 + S:F456L with Orf3a:A54S (32 seqs) of which 27 seqs has S:G213E (T22200A) #2621

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DailyCovidCases opened this issue May 28, 2024 · 7 comments

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@DailyCovidCases
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From branch 53 of sars-cov-2-variants/lineage-proposals#1253
JN.1+Orf3a:A54S+S:F456L(T22930A)
Query: G25552T,T22930A,C18894T
No. of seqs: 18 (USA)
First: EPI_ISL_18964427, 2024-1-26
Latest: PP701896.1, 2024-4-6
usher
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@FedeGueli
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21 but only two samples from MAy i would close this down

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Jun 22, 2024
@DailyCovidCases
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Tracked in tracker53

@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with Orf3a:A54S (18 seqs) JN.1 + S:F456L with Orf3a:A54S (29 seqs) Jul 26, 2024
@DailyCovidCases
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Tree now:
usher
Screenshot (188)

@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with Orf3a:A54S (29 seqs) JN.1 + S:F456L with Orf3a:A54S (32 seqs) Sep 2, 2024
@FedeGueli
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@DailyCovidCases thx for reopening, however it is likely slow but please add the S:G213E mutation to the title and if you can add T22200A (=213E) to the query. In that way @corneliusroemer can evaluate if the double spike mutation is worth to be designated or not. thx.

@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with Orf3a:A54S (32 seqs) JN.1 + S:F456L with Orf3a:A54S (32 seqs) of which 27 seqs has S:G213E Sep 4, 2024
@DailyCovidCases
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DailyCovidCases commented Sep 4, 2024

Tree now:
usher
Screenshot (209)
ping @corneliusroemer Is this branch worth a designation?

@FedeGueli
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FedeGueli commented Sep 5, 2024

thx please add T22200A to the query .

@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with Orf3a:A54S (32 seqs) of which 27 seqs has S:G213E JN.1 + S:F456L with Orf3a:A54S (32 seqs) of which 27 seqs has S:G213E (T22200A) Sep 5, 2024
@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Sep 21, 2024
@FedeGueli
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Last samples from July please close it

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Sep 25, 2024
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