JN.1+S:F456L with Orf10:P10S (107 seqs)

[DailyCovidCases]

From branch 36 of sars-cov-2-variants/lineage-proposals#1253
JN.1+Orf10:P10S+S:F456L
Query: T22928C,C26753T,C18894T,-G24872T,-A532G
No. of seqs: 50 (Australia 1 Brazil 34 Netherlands 3 USA 11 France 1)
First: EPI_ISL_18971329, 2024-1-12
Latest: EPI_ISL_19144571, 2024-5-7
usher

[FedeGueli]

94 ping @corneliusroemer this is a global lineage with GBW samples coming from multiple continents.

@DailyCovidCases please update the query with T22928C,C26753T,C18894T,-G24872T, T22928C,C26753T,C18894T,-G24872T,-A532G

excluding some unrelated samples the old query catches.
Tree now:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_2ce7_ff3430.json?c=country&label=id:node_6985157

[DailyCovidCases]

108 now

[FedeGueli]

108 now

please update the title too, thx

[DailyCovidCases]

123 seqs now, this branch worth to be designated

[FedeGueli]

the correct query is: T22928C,C26753T,C18894T,-G24872T,-A532G and gives 111 sequences only 4 in June. i think it is worth closing this.

[FedeGueli]

T22928C,C26753T,C18894T,-G24872T,-A532G

115 only 7 in June . i would close this one.

[FedeGueli]

T22928C,C26753T,C18894T,-G24872T,-A532G

115 only 7 in June . i would close this one.

Wait there is some interesting diversity in the recent samples i agree @corneliusroemer designate this one:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice14_genome_test_47cb1_3827d0.json?c=gt-S_346&label=id:node_6991317

Especially two of the three FLiRT branches shown above are interesting:
one has Orf6:I60S convergent mutation (with different AA) with JN.1.18.4
the other got further recent sample with S:K182N and S:V445P

Query for 346T+ Orf6:I60S:T27380G ,C1912T,A5227G
Query for 346T + 182N + 445P :A10027T, A10317G, A22108T

[FedeGueli]

please close this one

[FedeGueli]

i have checked the query now the correct query is T19092C,C10741T, C26753T, C29585T
counting 102 samples
last one collected in Brazil on June 28

[DailyCovidCases]

Tracked in tracker36
ping @corneliusroemer worth a designation this one

[FedeGueli]

T19092C,C10741T, C26753T, C29585T

Last one now from Puertorico collected on 2024-07-16

[DailyCovidCases]

T19092C,C10741T, C26753T, C29585T

Last one now from Puertorico collected on 2024-07-16

ping @corneliusroemer designating this could help it is one of the fast things a few months ago and not too small (>100 seqs)

[ryhisner]

@DailyCovidCases, why have you copied and pasted the exact words that @FedeGueli used in a different thread? This is a really dishonest way of communicating.

[ryhisner]

[FedeGueli]

7 samples in August in a 182 lineage likely dying off

[DailyCovidCases]

Tree now:
usher

@corneliusroemer Is this branch worth a designation?

[FedeGueli]

Last samples from july please close