JN.1.4 with Orf1a:D4117N, S:T22N and S:R346T (54 seqs)

[DailyCovidCases]

From branch 24 of sars-cov-2-variants/lineage-proposals#1089
JN.1.4 > T18453C > C7732T, Orf1a:D4117N (G12614A),S:T22N (C21627A), G22111A, S:R346T (G22599C), C27944T
Query: T18453C ,C7732T, ,G12614A,G22599C
Samples : 37 ( US 36 Mexico 1)
First: EPI_ISL_18730727, 2023-12-16
Latest: PP774304.1, 2024-04-21
usher

[FedeGueli]

New Query: C27944T,G12614A,C774T, G22599C
samples: 40
It seems S:T22N came before S:R346T but it is not possible to exclude it was acquired multiple times independently by this lineage
Current tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice13_genome_test_318ef_115640.json?label=id:node_7107010

[ryhisner]

Just 2 sequences since April 21 for a lineage that first appeared in December. Makes sense to close this issue I think.

[DailyCovidCases]

Tree now:
usher

@corneliusroemer Is this branch worth a designation?

[FedeGueli]

54 with the new query: C27944T,G12614A,C774T, G22599C
3 samples after July ( 1 in August)