EG.5.1.1 with ORF1a:T568I (nsp2_T388I), ORF1b:Q2181H (nsp15_Q130H), S:L455F (via G22927C) and ORF8:S67F (238 seqs, 22 countries)

[NkRMnZr]

Taken from Branch 53 of multitask sars-cov-2-variants/lineage-proposals#537

Defining Mutations: EG.5.1.1 > C27741T > C1912T, C1968T(ORF1a:T568I), T7111C, A20010T(ORF1b:Q2181H), T20592C, G22927C(S:L455F), C28093T(ORF8:S67F)
Query: C6541T, G22927C, C27741T
Earliest seq: 2023-08-28 (EPI_ISL_18345224, Cork, Ireland)
Latest seq: 2023-10-23 (EPI_ISL_18471085, Connecticut, USA)
Sampled Countries: UK (17: EN/16; WS/1), USA (14: NY/3; NJ/2; TX/2; UT/2; AZ/1; CA/1; CT/1; MN/1; OH/1), Ireland (9), Canada (4: ON/3; BC/1), Denmark (2), France (2), China (2: SC/1; ex. Spain/1), Belgium (1), South Korea (1), Netherlands (1)

Genomes:

EPI_ISL_18250090, EPI_ISL_18284832, EPI_ISL_18290882, EPI_ISL_18290915, EPI_ISL_18308328, EPI_ISL_18308339, EPI_ISL_18315360, EPI_ISL_18321565, EPI_ISL_18332107, EPI_ISL_18332505, EPI_ISL_18345224, EPI_ISL_18354139, EPI_ISL_18362839, EPI_ISL_18362880-18362881, EPI_ISL_18362951, EPI_ISL_18375850, EPI_ISL_18377642, EPI_ISL_18385706, EPI_ISL_18385720, EPI_ISL_18385728, EPI_ISL_18385734, EPI_ISL_18388184, EPI_ISL_18388760-18388761, EPI_ISL_18389241, EPI_ISL_18398829, EPI_ISL_18399988, EPI_ISL_18400877, EPI_ISL_18403587, EPI_ISL_18403998, EPI_ISL_18407932, EPI_ISL_18416430, EPI_ISL_18416450, EPI_ISL_18420893, EPI_ISL_18420911, EPI_ISL_18422267, EPI_ISL_18427521, EPI_ISL_18429173, EPI_ISL_18429518, EPI_ISL_18430506, EPI_ISL_18433870, EPI_ISL_18438642, EPI_ISL_18442008, EPI_ISL_18443922, EPI_ISL_18448322, EPI_ISL_18452961, EPI_ISL_18456955, EPI_ISL_18467439, EPI_ISL_18467445, EPI_ISL_18467479, EPI_ISL_18471085, EPI_ISL_18475314

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2eee6_b4b600.json?label=id:node_3484946

[NkRMnZr]

Tracking updates

11-18, 31 seqs from Austria, Belgium, Canada, China, Germany, Greece, Ireland, Japan, Norway, Spain, Sweden, UK and USA

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_318f7_a3be30.json?f_userOrOld=uploaded%20sample&label=id:node_3479385

EPI_ISL_18476797, EPI_ISL_18480905, EPI_ISL_18481009, EPI_ISL_18485392, EPI_ISL_18487878, EPI_ISL_18489520, EPI_ISL_18489614, EPI_ISL_18489947-18489949, EPI_ISL_18490060, EPI_ISL_18490070, EPI_ISL_18490158, EPI_ISL_18490161, EPI_ISL_18490388, EPI_ISL_18492330, EPI_ISL_18492427, EPI_ISL_18496088, EPI_ISL_18497739, EPI_ISL_18498306, EPI_ISL_18499357, EPI_ISL_18499362, EPI_ISL_18499369, EPI_ISL_18499712, EPI_ISL_18502446, EPI_ISL_18504397, EPI_ISL_18504443, EPI_ISL_18504976, EPI_ISL_18509086, EPI_ISL_18517892, EPI_ISL_18519490

11-25, 23 seqs from Belgium, Canada, France, Ireland, Norway, Sweden, UK and USA

EPI_ISL_18522262, EPI_ISL_18522499, EPI_ISL_18522560, EPI_ISL_18522626, EPI_ISL_18522750, EPI_ISL_18522754, EPI_ISL_18522879, EPI_ISL_18523094, EPI_ISL_18523696, EPI_ISL_18523851, EPI_ISL_18524915, EPI_ISL_18524934, EPI_ISL_18524941, EPI_ISL_18526599, EPI_ISL_18528972, EPI_ISL_18529645, EPI_ISL_18530343, EPI_ISL_18531397, EPI_ISL_18531592, EPI_ISL_18532510, EPI_ISL_18538156, EPI_ISL_18538276, EPI_ISL_18540700

12-02, 17 seqs from Canada, France, Ireland, New Zealand, Norway, Sweden, UK and USA

EPI_ISL_18545413, EPI_ISL_18547275, EPI_ISL_18547906, EPI_ISL_18549305, EPI_ISL_18549611, EPI_ISL_18550439, EPI_ISL_18550941, EPI_ISL_18552674, EPI_ISL_18552728, EPI_ISL_18553714, EPI_ISL_18555284, EPI_ISL_18556954, EPI_ISL_18561159, EPI_ISL_18561764, EPI_ISL_18568888, EPI_ISL_18569279, EPI_ISL_18569483

12-06, 16 seqs from Belgium, Canada, Norway, UK and USA

EPI_ISL_18578044, EPI_ISL_18578231, EPI_ISL_18578236, EPI_ISL_18578243, EPI_ISL_18578986, EPI_ISL_18579625, EPI_ISL_18579630, EPI_ISL_18579646, EPI_ISL_18579670, EPI_ISL_18579680, EPI_ISL_18580213, EPI_ISL_18581983, EPI_ISL_18583458, EPI_ISL_18585369-18585370, EPI_ISL_18593619

12-14, 28 seqs from Belgium, Canada, Czech, Denmark, Sweden, UK and USA

EPI_ISL_18593968, EPI_ISL_18594405, EPI_ISL_18594431, EPI_ISL_18594466, EPI_ISL_18595014, EPI_ISL_18598348, EPI_ISL_18598353-18598354, EPI_ISL_18598356, EPI_ISL_18602265, EPI_ISL_18606435, EPI_ISL_18606438, EPI_ISL_18606502, EPI_ISL_18609188, EPI_ISL_18609402, EPI_ISL_18611200, EPI_ISL_18612350, EPI_ISL_18613097-18613098, EPI_ISL_18613117, EPI_ISL_18613161-18613162, EPI_ISL_18614466, EPI_ISL_18614809, EPI_ISL_18617391, EPI_ISL_18617478, EPI_ISL_18620839, EPI_ISL_18623042

24-01-13, 73 seqs from Australia, Canada, France, Germany, Italy, Japan, S. Korea, New Zealand, Slovakia, Sweden, UK and USA

EPI_ISL_18637343, EPI_ISL_18637979, EPI_ISL_18637987, EPI_ISL_18638120, EPI_ISL_18641957, EPI_ISL_18651423, EPI_ISL_18654922, EPI_ISL_18655274, EPI_ISL_18655280, EPI_ISL_18655470, EPI_ISL_18656867, EPI_ISL_18658332, EPI_ISL_18658539, EPI_ISL_18660010, EPI_ISL_18662534, EPI_ISL_18668215, EPI_ISL_18669889, EPI_ISL_18670345, EPI_ISL_18671051, EPI_ISL_18671113, EPI_ISL_18671409-18671410, EPI_ISL_18671590, EPI_ISL_18672513, EPI_ISL_18672532, EPI_ISL_18672546, EPI_ISL_18672571, EPI_ISL_18672596, EPI_ISL_18676199, EPI_ISL_18677826, EPI_ISL_18683050, EPI_ISL_18686611, EPI_ISL_18686829, EPI_ISL_18689128, EPI_ISL_18689149, EPI_ISL_18691150, EPI_ISL_18696230, EPI_ISL_18697225, EPI_ISL_18699444, EPI_ISL_18700000, EPI_ISL_18700054, EPI_ISL_18703987, EPI_ISL_18705411, EPI_ISL_18710574, EPI_ISL_18714253, EPI_ISL_18714256, EPI_ISL_18714260-18714261, EPI_ISL_18716813, EPI_ISL_18720662, EPI_ISL_18721191, EPI_ISL_18721210, EPI_ISL_18722996, EPI_ISL_18723588, EPI_ISL_18724587, EPI_ISL_18724613, EPI_ISL_18724638-18724640, EPI_ISL_18733859, EPI_ISL_18740106, EPI_ISL_18740130, EPI_ISL_18740263, EPI_ISL_18740762, EPI_ISL_18743958, EPI_ISL_18747884, EPI_ISL_18749430, EPI_ISL_18750243, EPI_ISL_18750808, EPI_ISL_18754318, EPI_ISL_18757685, EPI_ISL_18758018-18758019

[FedeGueli]

172 now

[DailyCovidCases]

Please close this issue