EG.5.1.1 with ORF1a:A2909V (nsp4_A146V) and S:L455F (91 seqs, 11 countries)

[NkRMnZr]

Taken from Branch 13 of Multitask sars-cov-2-variants/lineage-proposals#537

Defining Mutations: EG.5.1.1 > C19011T > C8991T(ORF1a:A2909V) > G22927T(S:L455F)
Query: C8991T, C19011T, G22927T
Earliest seq: 2023-08-14 (EPI_ISL_18146054, Hubei, China)
Latest seq: 2023-10-31 (EPI_ISL_18473645, Singapore, travel history: India)
Sampled Countries: China (38: HB/23; SH/4; AH/3; BJ/2; YN/2; GS/1; HA/1; QH/1; XJ/1), Singapore (5: Local/2; ex. China/2; ex. India/1), Netherlands (3), Australia (2: NSW), Austria (1), Croatia (1), France (1), Laos (1)

Genomes:

EPI_ISL_18141179, EPI_ISL_18146054, EPI_ISL_18146087, EPI_ISL_18217222, EPI_ISL_18217236, EPI_ISL_18254205, EPI_ISL_18268148-18268149, EPI_ISL_18268153, EPI_ISL_18268244, EPI_ISL_18284712, EPI_ISL_18284755, EPI_ISL_18306934, EPI_ISL_18313098, EPI_ISL_18313105, EPI_ISL_18313198, EPI_ISL_18313226, EPI_ISL_18349877, EPI_ISL_18354962, EPI_ISL_18363349, EPI_ISL_18376465, EPI_ISL_18376494, EPI_ISL_18384477, EPI_ISL_18384508, EPI_ISL_18388887, EPI_ISL_18388889, EPI_ISL_18388891, EPI_ISL_18438085, EPI_ISL_18438311, EPI_ISL_18438356, EPI_ISL_18438359, EPI_ISL_18438427, EPI_ISL_18441693, EPI_ISL_18442727, EPI_ISL_18442730, EPI_ISL_18447747, EPI_ISL_18457659, EPI_ISL_18461703, EPI_ISL_18461971, EPI_ISL_18463327, EPI_ISL_18463426, EPI_ISL_18464919, EPI_ISL_18464984, EPI_ISL_18465193, EPI_ISL_18465381, EPI_ISL_18465391, EPI_ISL_18466345, EPI_ISL_18473414, EPI_ISL_18473645, EPI_ISL_18475163, EPI_ISL_18475178

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_16441_b42970.json?label=id:node_3500994

[NkRMnZr]

Tracking updates

23-11-18, 12 seqs from Australia, China, Japan, South Korea EPI_ISL_18475465, EPI_ISL_18481130, EPI_ISL_18481234, EPI_ISL_18488072-18488073, EPI_ISL_18495818, EPI_ISL_18501718, EPI_ISL_18503616, EPI_ISL_18505620, EPI_ISL_18505806, EPI_ISL_18508487, EPI_ISL_18518383
12-06, 7 seqs from Australia, China, Netherlands and Singapore EPI_ISL_18523037, EPI_ISL_18567929, EPI_ISL_18576698, EPI_ISL_18576770, EPI_ISL_18580573, EPI_ISL_18589897, EPI_ISL_18589996

24-01-13, 21 seq from China, Japan, S. Korea, Malaysia, Netherlands and USA

EPI_ISL_18597674, EPI_ISL_18602642, EPI_ISL_18602668, EPI_ISL_18612487, EPI_ISL_18624510, EPI_ISL_18634045, EPI_ISL_18640076, EPI_ISL_18640078, EPI_ISL_18641805, EPI_ISL_18659069, EPI_ISL_18672184, EPI_ISL_18672311, EPI_ISL_18672326, EPI_ISL_18672361, EPI_ISL_18674270, EPI_ISL_18701204, EPI_ISL_18703394, EPI_ISL_18703867, EPI_ISL_18733608, EPI_ISL_18733615, EPI_ISL_18733674

[DailyCovidCases]

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