EG.5.1.1 with ORF3a:T34K, N:G204P (G>R>P) and S:L455F (196 seqs, 19 countries)

[NkRMnZr]

Taken from Branch 27 of multitask sars-cov-2-variants/lineage-proposals#537

Defining Mutations: EG.5.1.1 > C25493A(ORF3a:T34K) > G28884C(N:G204P) > G22927T(S:L455F)
Query: C6541T, G22927T, C25493A
Earliest seq: 2023-07-18 (EPI_ISL_18245992, Heilongjiang)
Latest seq: 2023-10-10 (EPI_ISL_18397223, Singapore)
Sampled Countries: China (18: HL/10; LN/2; SH/2; HB; SC; SX; YN), Singapore (14), Denmark (4), Italy (3), USA (3: CA/2; NY), France (2), Australia (1: NSW), Germany (1), South Korea (1), Sweden (1)

Genomes:

EPI_ISL_18138073, EPI_ISL_18232576, EPI_ISL_18244264, EPI_ISL_18245964, EPI_ISL_18245971, EPI_ISL_18245992, EPI_ISL_18246139, EPI_ISL_18246193, EPI_ISL_18282065, EPI_ISL_18300796, EPI_ISL_18306948, EPI_ISL_18306976, EPI_ISL_18306993, EPI_ISL_18307005-18307006, EPI_ISL_18307019, EPI_ISL_18307026, EPI_ISL_18313136, EPI_ISL_18320696, EPI_ISL_18324230, EPI_ISL_18329168, EPI_ISL_18330265, EPI_ISL_18339790, EPI_ISL_18352920, EPI_ISL_18356975, EPI_ISL_18361976, EPI_ISL_18362045, EPI_ISL_18376532, EPI_ISL_18376955, EPI_ISL_18377536, EPI_ISL_18377636, EPI_ISL_18382895, EPI_ISL_18384393, EPI_ISL_18384413, EPI_ISL_18384418, EPI_ISL_18384426, EPI_ISL_18384448, EPI_ISL_18384625, EPI_ISL_18384643, EPI_ISL_18391206-18391207, EPI_ISL_18397223, EPI_ISL_18397241, EPI_ISL_18397267, EPI_ISL_18397584, EPI_ISL_18401938, EPI_ISL_18405209, EPI_ISL_18406218

UShER:
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_58dd0_2eda30.json?f_userOrOld=uploaded%20sample&label=id:node_3458763

[NkRMnZr]

Tracking updates

23-10-25, 8 seqs from Japan, Singapore and USA EPI_ISL_18416389, EPI_ISL_18419626, EPI_ISL_18423553, EPI_ISL_18428545, EPI_ISL_18428578, EPI_ISL_18428598, EPI_ISL_18428721, EPI_ISL_18428747
11-05, 20 seqs from China, Singapore, Sweden and UK EPI_ISL_18438058, EPI_ISL_18438161, EPI_ISL_18444907, EPI_ISL_18444980, EPI_ISL_18445082, EPI_ISL_18445110, EPI_ISL_18445140, EPI_ISL_18445214-18445215, EPI_ISL_18454222, EPI_ISL_18458655, EPI_ISL_18462666, EPI_ISL_18465030, EPI_ISL_18465056, EPI_ISL_18465066, EPI_ISL_18465176, EPI_ISL_18465209, EPI_ISL_18465252, EPI_ISL_18465284, EPI_ISL_18465302

11-18, 34 seqs from Australia, Austria, China, Japan, South Korea, Singapore, Sweden

EPI_ISL_18473279, EPI_ISL_18473314, EPI_ISL_18473371, EPI_ISL_18473380, EPI_ISL_18473432, EPI_ISL_18473468, EPI_ISL_18473478, EPI_ISL_18473500, EPI_ISL_18473515, EPI_ISL_18473558, EPI_ISL_18473605, EPI_ISL_18473657, EPI_ISL_18484263, EPI_ISL_18484269, EPI_ISL_18484306, EPI_ISL_18484418, EPI_ISL_18485440, EPI_ISL_18488021, EPI_ISL_18488080, EPI_ISL_18490135, EPI_ISL_18490179, EPI_ISL_18494065, EPI_ISL_18495607, EPI_ISL_18495834, EPI_ISL_18495837-18495838, EPI_ISL_18495851, EPI_ISL_18495908, EPI_ISL_18496540, EPI_ISL_18503576, EPI_ISL_18503732, EPI_ISL_18505857, EPI_ISL_18508143, EPI_ISL_18508532

11-26, 11 seqs from China, Finland, Japan, S. Korea, Netherlands and Sweden

EPI_ISL_18522372, EPI_ISL_18522376, EPI_ISL_18535407, EPI_ISL_18535544, EPI_ISL_18538318-18538319, EPI_ISL_18538322, EPI_ISL_18541127, EPI_ISL_18541298, EPI_ISL_18541356, EPI_ISL_18543357

11-26, 11 seqs from Japan, S. Korea, Singapore and Sweden

EPI_ISL_18544024, EPI_ISL_18544524, EPI_ISL_18544554, EPI_ISL_18544602, EPI_ISL_18544631, EPI_ISL_18544682, EPI_ISL_18544886, EPI_ISL_18559481, EPI_ISL_18564740, EPI_ISL_18569356, EPI_ISL_18569503

12-06, 19 seqs from Denmark, Japan, Netherlands, Singapore and Sweden

EPI_ISL_18580705, EPI_ISL_18587775, EPI_ISL_18589879, EPI_ISL_18589966, EPI_ISL_18590007, EPI_ISL_18590015, EPI_ISL_18590048, EPI_ISL_18590226, EPI_ISL_18590253, EPI_ISL_18590284, EPI_ISL_18590316, EPI_ISL_18590321, EPI_ISL_18590361, EPI_ISL_18590392, EPI_ISL_18590420, EPI_ISL_18590431, EPI_ISL_18590437, EPI_ISL_18590821, EPI_ISL_18591845

12-14, 12 seqs from South Africa, Austria, China, Denmark, France, S. Korea, Singapore, Sweden, Switzerland, and USA

EPI_ISL_18594385, EPI_ISL_18596716, EPI_ISL_18597385, EPI_ISL_18598376, EPI_ISL_18598381, EPI_ISL_18604563, EPI_ISL_18604965, EPI_ISL_18605821, EPI_ISL_18606090, EPI_ISL_18607133, EPI_ISL_18607143, EPI_ISL_18611540, EPI_ISL_18611621, EPI_ISL_18612221, EPI_ISL_18615805, EPI_ISL_18615884, EPI_ISL_18615887, EPI_ISL_18615913, EPI_ISL_18617715, EPI_ISL_18618319-18618320, EPI_ISL_18618323

24-01-13, 23 seqs from Australia, China, Denmark, Finland, Indonesia, S. Korea, Netherlands, Russia, Singapore, Switzerland and USA

EPI_ISL_18635105, EPI_ISL_18635124, EPI_ISL_18635154, EPI_ISL_18635456, EPI_ISL_18639204, EPI_ISL_18639799, EPI_ISL_18651230, EPI_ISL_18662445-18662446, EPI_ISL_18662672, EPI_ISL_18667451, EPI_ISL_18669342, EPI_ISL_18674570, EPI_ISL_18680013, EPI_ISL_18685355, EPI_ISL_18701055, EPI_ISL_18701069, EPI_ISL_18701073, EPI_ISL_18703418, EPI_ISL_18712335, EPI_ISL_18716361, EPI_ISL_18716397, EPI_ISL_18717833

[FedeGueli]

173

[DailyCovidCases]

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