HK.11 with S:L455F (52 seqs, 14 countries)

[NkRMnZr]

Taken from Branch 26 of Multitask sars-cov-2-variants/lineage-proposals#537

Defining Mutations: HK.11 > T13228C > T4789A > G22927T(S:L455F)
Query: T4789A, T13228C, G22927T
Earliest seq: 2023-08-21 (EPI_ISL_18221467, Halland, Sweden, OR EPI_ISL_18244233, Denmark)
Latest seq: 2023-09-26 (EPI_ISL_18345561, Israel)
Sampled Countries: Denmark (10), USA (9: TX/4; DE/3; ex. Netherlands/2), Italy (7), France (6), Israel (2), Netherlands (2), Germany (1), Ireland (1), Spain (1: Canary Islands), Sweden (1), Norway (1), UK (1: EN)

Genomes:

EPI_ISL_18221467, EPI_ISL_18244233, EPI_ISL_18244247, EPI_ISL_18263586, EPI_ISL_18264001, EPI_ISL_18264572, EPI_ISL_18293763, EPI_ISL_18294659, EPI_ISL_18294691, EPI_ISL_18294704, EPI_ISL_18295258, EPI_ISL_18295302, EPI_ISL_18295696, EPI_ISL_18300050, EPI_ISL_18302407, EPI_ISL_18315564, EPI_ISL_18315921, EPI_ISL_18321315, EPI_ISL_18322005-18322006, EPI_ISL_18323033, EPI_ISL_18323451, EPI_ISL_18326382, EPI_ISL_18326526, EPI_ISL_18326648, EPI_ISL_18326656, EPI_ISL_18326753, EPI_ISL_18329961, EPI_ISL_18331395, EPI_ISL_18331503, EPI_ISL_18331516, EPI_ISL_18332551, EPI_ISL_18337357, EPI_ISL_18337367, EPI_ISL_18342023, EPI_ISL_18342090-18342091, EPI_ISL_18345561, EPI_ISL_18349859, EPI_ISL_18356554, EPI_ISL_18357151, EPI_ISL_18360586

UShER:
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_4b77_69c460.json?f_userOrOld=uploaded%20sample&label=id:node_3437843

[FedeGueli]

This shows advantage over HK.3 https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?nextcladePangoLineage=HK.3*&nucMutations1=T4789A%2CT13228C%2CG22927T&analysisMode=CompareToBaseline& maybe in fluenced by Denmark good seqs/Pop ratio.

[NkRMnZr]

Tracking updates

10-14, 10 seqs from Belgium, France, Netherlands, Switzerland and USA

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3e822_ac9230.json?f_userOrOld=uploaded%20sample&label=id:node_3447425

EPI_ISL_18378945, EPI_ISL_18379738, EPI_ISL_18380098, EPI_ISL_18380103, EPI_ISL_18385041, EPI_ISL_18385044, EPI_ISL_18385445, EPI_ISL_18386764, EPI_ISL_18387050, EPI_ISL_18387703

[FedeGueli]

Designated HK.11.1 via e268dbf