FK.1.3.2 with S:E1111Q (100 seqs, mainly in Japan, 5 countries)

[NkRMnZr]

Transferred from sars-cov-2-variants/lineage-proposals#533

Defining Mutations: FK.1.3.2 > T25812C > C17352T, G24893C(S:E1111Q)
Query: C9391T, G24893C, T25812C
Earliest seq: 2023-05-29 (EPI_ISL_17958623, Chiba, Japan)
Latest seq: 2023-07-21 (EPI_ISL_18051710, Yamaguchi, Japan)
Sampled Countries: Japan (52), South Korea (2), USA (2, California, Hawaii)

Genomes:

EPI_ISL_17820066, EPI_ISL_17820074, EPI_ISL_17941103, EPI_ISL_17958623, EPI_ISL_17958990, EPI_ISL_17959023, EPI_ISL_17960018, EPI_ISL_17960069, EPI_ISL_17961060, EPI_ISL_17973227-17973228, EPI_ISL_17973234, EPI_ISL_17973240, EPI_ISL_17978759, EPI_ISL_17978797, EPI_ISL_17978819, EPI_ISL_17979895, EPI_ISL_17980741, EPI_ISL_17982241, EPI_ISL_17982263, EPI_ISL_17995338, EPI_ISL_17996442, EPI_ISL_17996476, EPI_ISL_17996849, EPI_ISL_18007014, EPI_ISL_18008860, EPI_ISL_18012746, EPI_ISL_18012964, EPI_ISL_18031540, EPI_ISL_18040317, EPI_ISL_18041455, EPI_ISL_18041475, EPI_ISL_18044126, EPI_ISL_18044139, EPI_ISL_18047788, EPI_ISL_18051670, EPI_ISL_18051674, EPI_ISL_18051705, EPI_ISL_18051708, EPI_ISL_18051710, EPI_ISL_18051829, EPI_ISL_18051831, EPI_ISL_18052001, EPI_ISL_18056153, EPI_ISL_18056234, EPI_ISL_18058385, EPI_ISL_18059015, EPI_ISL_18060289, EPI_ISL_18060495, EPI_ISL_18065227, EPI_ISL_18066481, EPI_ISL_18066522, EPI_ISL_18067245, EPI_ISL_18067258, EPI_ISL_18067288, EPI_ISL_18067611

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2c3cd_f71940.json?f_userOrOld=uploaded%20sample&label=id:node_7474704

[NkRMnZr]

Tracking updates:

08-08, 6 seqs from Japan

EPI_ISL_18071595, EPI_ISL_18071638, EPI_ISL_18071670, EPI_ISL_18077523, EPI_ISL_18077536, EPI_ISL_18077547

08-13, 3 seqs from USA and Japan

EPI_ISL_18080602, EPI_ISL_18081886, EPI_ISL_18093355

08-18, 4 seqs from Japan

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_34a7c_f767e0.json?f_userOrOld=uploaded%20sample&label=id:node_7616918

EPI_ISL_18097460, EPI_ISL_18106173, EPI_ISL_18109154, EPI_ISL_18111799

08-22, 9 seqs from Japan

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_40b4f_4b8a20.json?f_userOrOld=uploaded%20sample&label=id:node_7632472

EPI_ISL_18116050, EPI_ISL_18116101, EPI_ISL_18122472, EPI_ISL_18122515, EPI_ISL_18122667, EPI_ISL_18122839, EPI_ISL_18122943, EPI_ISL_18122985, EPI_ISL_18123100

08-25, 4 seqs from Japan

EPI_ISL_18127246, EPI_ISL_18127308, EPI_ISL_18127354, EPI_ISL_18130502

09-02, 18 seqs from Canada, China, Japan and USA

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1eeb9_2e0140.json?f_userOrOld=uploaded%20sample

EPI_ISL_18146235, EPI_ISL_18160501, EPI_ISL_18164805, EPI_ISL_18164818-18164819, EPI_ISL_18164986, EPI_ISL_18164990, EPI_ISL_18165242, EPI_ISL_18165476, EPI_ISL_18168469-18168470, EPI_ISL_18207953, EPI_ISL_18208021, EPI_ISL_18208631, EPI_ISL_18208895, EPI_ISL_18208933, EPI_ISL_18208973, EPI_ISL_18209059