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Another XBB.2.3+S:G184V with orf1a:P1786L (451 seqs, 33 countries) #1945

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xz-keg opened this issue Apr 23, 2023 · 31 comments
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Another XBB.2.3+S:G184V with orf1a:P1786L (451 seqs, 33 countries) #1945

xz-keg opened this issue Apr 23, 2023 · 31 comments
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XBB proposed sublineage of XBB

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@xz-keg
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xz-keg commented Apr 23, 2023 •
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I'd like to propose a side branch of XBB.2.3.2.

sub-lineage of: XBB.2.3
mutations on top of XBB.2.3: S:G184V(G22113T, same as XBB.2.3.2), Orf1a:P1786L(C5622T)
GISAID query: C5622T,G22113T,G6536A
No. of seqs: 43( Australia 1 Brunei 1 Scotland 2 USA 3(California 2 Texas 1) India 37)
First seq: EPI_ISL_17269931(India) 2023-3-9
Latest seq: EPI_ISL_17504909(Brunei) 2023-4-1

usher

Screen Shot 2023-04-23 at 16 59 47

Also having S:G184V, it is as fast as its very fast brother XBB.2.3.2, in fact a little faster under current data. Hence a lot faster than the whole XBB.2.3 family. Although number of seqs is still too small.

Screen Shot 2023-04-23 at 17 00 54

Screen Shot 2023-04-23 at 17 04 02
@thomasppeacock thomasppeacock added the XBB proposed sublineage of XBB label Apr 23, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (43 seqs, 5 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (49 seqs, 5 countries) Apr 25, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (49 seqs, 5 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (62 seqs, 5 countries) May 1, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (62 seqs, 5 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (71 seqs, 5 countries) May 3, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (71 seqs, 5 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (74 seqs, 5 countries) May 7, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (74 seqs, 5 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (78 seqs, 5 countries) May 10, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (78 seqs, 5 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (81 seqs, 5 countries) May 13, 2023
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xz-keg commented May 24, 2023

96 seqs and in Canada.

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (81 seqs, 5 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (96 seqs, 6 countries) May 24, 2023
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xz-keg commented May 30, 2023

101 seqs, Sweden and Japan

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (96 seqs, 6 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (101 seqs, 8 countries) May 30, 2023
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xz-keg commented Jun 1, 2023

112 and in China

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (101 seqs, 8 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (112 seqs, 9 countries) Jun 1, 2023
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xz-keg commented Jun 3, 2023

114 and in South Korea.

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (112 seqs, 9 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (114 seqs, 10 countries) Jun 3, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (114 seqs, 10 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (115 seqs, 10 countries) Jun 4, 2023
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xz-keg commented Jun 8, 2023

128 seqs, Slovenia, Canary Islands , France

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (115 seqs, 10 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (128 seqs, 13 countries) Jun 8, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (128 seqs, 13 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (129 seqs, 13 countries) Jun 9, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (129 seqs, 13 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (130 seqs, 13 countries) Jun 10, 2023
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xz-keg commented Jun 12, 2023

131 and in Portugal

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (130 seqs, 13 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (131 seqs, 14 countries) Jun 12, 2023
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xz-keg commented Jun 14, 2023

two more in Mauritius

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (131 seqs, 14 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (133 seqs, 15 countries) Jun 14, 2023
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xz-keg commented Jun 19, 2023

139 seqs, Israel,

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (133 seqs, 15 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (139 seqs, 16 countries) Jun 19, 2023
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xz-keg commented Jun 25, 2023

146 seqs, Spain

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (139 seqs, 16 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (146 seqs, 17 countries) Jun 25, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (146 seqs, 17 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (150 seqs, 17 countries) Jun 27, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (150 seqs, 17 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (161 seqs, 17 countries) Jun 28, 2023
@FedeGueli FedeGueli mentioned this issue Sep 1, 2023
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@HynnSpylor HynnSpylor mentioned this issue Sep 1, 2023
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@xz-keg
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xz-keg commented Sep 5, 2023

300, Oman,

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (275 seqs, 26 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (300 seqs, 27 countries) Sep 5, 2023
@FedeGueli
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This should be designated : @corneliusroemer @thomasppeacock @AngieHinrichs @InfrPopGen

@FedeGueli
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Orf1a:P1786L is NSP3_P968L = PLPro_P223L didnt find anything about that tough.

@xz-keg
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xz-keg commented Sep 6, 2023

311, Ireland.

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (300 seqs, 27 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (311 seqs, 28 countries) Sep 6, 2023
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xz-keg commented Sep 6, 2023

@FedeGueli There seems to be more than #2241 sub-branch of this also growing quickly these days.

@FedeGueli
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@FedeGueli There seems to be more than #2241 sub-branch of this also growing quickly these days.

thx i will take a look!

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (311 seqs, 28 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (315 seqs, 28 countries) Sep 9, 2023
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xz-keg commented Sep 13, 2023

325 now, new country of New Zealand

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (315 seqs, 28 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (325 seqs, 29 countries) Sep 13, 2023
@FedeGueli
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I suggest to designte this one @corneliusroemer it is a late branch but still as fit as fit as the others and already widespread.

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (325 seqs, 29 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (343 seqs, 29 countries) Sep 16, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (343 seqs, 29 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (357 seqs, 29 countries) Sep 20, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (357 seqs, 29 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (364 seqs, 29 countries) Sep 22, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (364 seqs, 29 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (372 seqs, 29 countries) Sep 26, 2023
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xz-keg commented Sep 29, 2023

392, Greece

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (372 seqs, 29 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (392 seqs, 30 countries) Sep 29, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (392 seqs, 30 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (406 seqs, 30 countries) Oct 3, 2023
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xz-keg commented Oct 6, 2023

422, Germany, Singapore

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (406 seqs, 30 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (422 seqs, 32 countries) Oct 6, 2023
@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (422 seqs, 32 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (433 seqs, 32 countries) Oct 10, 2023
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xz-keg commented Oct 14, 2023

451, Turkey

@xz-keg xz-keg changed the title Another XBB.2.3+S:G184V with orf1a:P1786L (433 seqs, 32 countries) Another XBB.2.3+S:G184V with orf1a:P1786L (451 seqs, 33 countries) Oct 14, 2023
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xz-keg commented Oct 15, 2023

Designated XBB.2.3.19

@xz-keg xz-keg closed this as completed Oct 15, 2023
FedeGueli referenced this issue Oct 15, 2023
@corneliusroemer
Designate XBB.2.3.19 (S:G184V, ORF1a:P1786L, India) with 500 seqs
083357e
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via 083357e

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